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shank3a SH3 and multiple ankyrin repeat domains 3a [ Poecilia latipinna (sailfin molly) ]

Gene ID: 106956286, updated on 12-Sep-2024

Summary

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Gene symbol
shank3a
Gene description
SH3 and multiple ankyrin repeat domains 3a
Gene type
protein coding
RefSeq status
MODEL
Organism
Poecilia latipinna
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Poecilia
Annotation information
Annotation category: partial on reference assembly
Orthologs
zebrafish all
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Genomic context

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See shank3a in Genome Data Viewer
Location:
chromosome: Un
Exon count:
12
Annotation release Status Assembly Chr Location
100 current P_latipinna-1.0 (GCF_001443285.1) Unplaced Scaffold NW_015113421.1 (10991..65713)

NW_015113421.1Genomic Context describing neighboring genes Neighboring gene RAB, member of RAS oncogene family-like 2 Neighboring gene ciliary microtubule associated protein 1B

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_015113421.1 Unplaced Scaffold Reference P_latipinna-1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ionotropic glutamate receptor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables synaptic receptor adaptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in dendritic spine IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in postsynaptic density IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in postsynaptic membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
SH3 and multiple ankyrin repeat domains protein 3-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Poecilia latipinna Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference P_latipinna-1.0

Genomic

  1. NW_015113421.1 Reference P_latipinna-1.0

    Range
    10991..65713
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015047035.1 → XP_014902521.1  SH3 and multiple ankyrin repeat domains protein 3-like

    Conserved Domains (4) summary
    cd09506
    Location:1311 → 1376
    SAM_Shank1,2,3; SAM domain of Shank1,2,3 family proteins
    smart00454
    Location:1313 → 1378
    SAM; Sterile alpha motif
    cd00992
    Location:95 → 184
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    cl17036
    Location:22 → 47
    SH3; Src Homology 3 domain superfamily
Nucleotide Protein
Heading Accession and Version

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