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atxn2l ataxin 2-like [ Poecilia latipinna (sailfin molly) ]

Gene ID: 106956257, updated on 13-Mar-2024

Summary

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Gene symbol
atxn2l
Gene description
ataxin 2-like
See related
Ensembl:ENSPLAG00000017094
Gene type
protein coding
RefSeq status
MODEL
Organism
Poecilia latipinna
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Poecilia
Orthologs
human zebrafish all
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Genomic context

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See atxn2l in Genome Data Viewer
Location:
chromosome: Un
Exon count:
23
Annotation release Status Assembly Chr Location
100 current P_latipinna-1.0 (GCF_001443285.1) Unplaced Scaffold NW_015113417.1 (251828..274285, complement)

NW_015113417.1Genomic Context describing neighboring genes Neighboring gene double C2 domain alpha Neighboring gene ADP-ribosylarginine hydrolase Neighboring gene tectonic-3-like Neighboring gene mitochondrial tRNA translation optimization 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_015113417.1 Unplaced Scaffold Reference P_latipinna-1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in stress granule assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasmic stress granule IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ataxin-2-like protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Poecilia latipinna Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference P_latipinna-1.0

Genomic

  1. NW_015113417.1 Reference P_latipinna-1.0

    Range
    251828..274285 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015046981.1 → XP_014902467.1  ataxin-2-like protein isoform X2

    UniProtKB/TrEMBL
    A0A3B3VTA3
    Conserved Domains (3) summary
    pfam03153
    Location:867 → 1020
    TFIIA; Transcription factor IIA, alpha/beta subunit
    pfam06741
    Location:209 → 258
    LsmAD; LsmAD domain
    pfam14438
    Location:65 → 138
    SM-ATX; Ataxin 2 SM domain

  2. XM_015046983.1 → XP_014902469.1  ataxin-2-like protein isoform X3

    UniProtKB/TrEMBL
    A0A3B3UL09, A0A3B3VTA3
    Related
    ENSPLAP00000028034.1, ENSPLAT00000021632.1
    Conserved Domains (3) summary
    pfam03153
    Location:855 → 1008
    TFIIA; Transcription factor IIA, alpha/beta subunit
    pfam06741
    Location:185 → 234
    LsmAD; LsmAD domain
    pfam14438
    Location:41 → 114
    SM-ATX; Ataxin 2 SM domain

  3. XM_015046982.1 → XP_014902468.1  ataxin-2-like protein isoform X3

    UniProtKB/TrEMBL
    A0A3B3UL09, A0A3B3VTA3
    Related
    ENSPLAP00000013568.1, ENSPLAT00000021593.1
    Conserved Domains (3) summary
    pfam03153
    Location:855 → 1008
    TFIIA; Transcription factor IIA, alpha/beta subunit
    pfam06741
    Location:185 → 234
    LsmAD; LsmAD domain
    pfam14438
    Location:41 → 114
    SM-ATX; Ataxin 2 SM domain

  4. XM_015046980.1 → XP_014902466.1  ataxin-2-like protein isoform X1

    UniProtKB/TrEMBL
    A0A3B3VTA3
    Conserved Domains (3) summary
    pfam03153
    Location:879 → 1032
    TFIIA; Transcription factor IIA, alpha/beta subunit
    pfam06741
    Location:209 → 258
    LsmAD; LsmAD domain
    pfam14438
    Location:65 → 138
    SM-ATX; Ataxin 2 SM domain
Nucleotide Protein
Heading Accession and Version

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