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LOC106954700 ras-related protein Rab-9A [ Poecilia latipinna (sailfin molly) ]

Gene ID: 106954700, updated on 2-Nov-2023

Summary

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Gene symbol
LOC106954700
Gene description
ras-related protein Rab-9A
See related
Ensembl:ENSPLAG00000022926
Gene type
protein coding
RefSeq status
MODEL
Organism
Poecilia latipinna
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Poecilia
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Genomic context

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See LOC106954700 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
5
Annotation release Status Assembly Chr Location
100 current P_latipinna-1.0 (GCF_001443285.1) Unplaced Scaffold NW_015112653.1 (4031..6227, complement)

NW_015112653.1Genomic Context describing neighboring genes Neighboring gene trafficking protein particle complex subunit 2 Neighboring gene EGF-like-domain, multiple 6 Neighboring gene thymosin beta-b-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_015112653.1 Unplaced Scaffold Reference P_latipinna-1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables GTP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables GTPase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in Rab protein signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in retrograde transport, endosome to Golgi IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in late endosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in lysosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in phagocytic vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ras-related protein Rab-9A

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Poecilia latipinna Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference P_latipinna-1.0

Genomic

  1. NW_015112653.1 Reference P_latipinna-1.0

    Range
    4031..6227 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015044439.1 → XP_014899925.1  ras-related protein Rab-9A

    UniProtKB/TrEMBL
    A0A3B3V019, A0A3B3VC09
    Conserved Domains (1) summary
    cd04116
    Location:4 → 171
    Rab9; Rab GTPase family 9 (Rab9)

  2. XM_015044429.1 → XP_014899915.1  ras-related protein Rab-9A

    UniProtKB/TrEMBL
    A0A3B3V019, A0A3B3VC09
    Related
    ENSPLAP00000018312.1, ENSPLAT00000031798.1
    Conserved Domains (1) summary
    cd04116
    Location:4 → 171
    Rab9; Rab GTPase family 9 (Rab9)

  3. XM_015044413.1 → XP_014899899.1  ras-related protein Rab-9A

    UniProtKB/TrEMBL
    A0A3B3V019, A0A3B3VC09
    Conserved Domains (1) summary
    cd04116
    Location:4 → 171
    Rab9; Rab GTPase family 9 (Rab9)

  4. XM_015044421.1 → XP_014899907.1  ras-related protein Rab-9A

    UniProtKB/TrEMBL
    A0A3B3V019, A0A3B3VC09
    Conserved Domains (1) summary
    cd04116
    Location:4 → 171
    Rab9; Rab GTPase family 9 (Rab9)

  5. XM_015044405.1 → XP_014899891.1  ras-related protein Rab-9A

    UniProtKB/TrEMBL
    A0A3B3V019, A0A3B3VC09
    Conserved Domains (1) summary
    cd04116
    Location:4 → 171
    Rab9; Rab GTPase family 9 (Rab9)
Nucleotide Protein
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