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lsg1 large 60S subunit nuclear export GTPase 1 [ Poecilia latipinna (sailfin molly) ]

Gene ID: 106954418, updated on 13-Mar-2024

Summary

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Gene symbol
lsg1
Gene description
large 60S subunit nuclear export GTPase 1
See related
Ensembl:ENSPLAG00000019536
Gene type
protein coding
RefSeq status
MODEL
Organism
Poecilia latipinna
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Poecilia
Orthologs
human zebrafish all
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Genomic context

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See lsg1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
14
Annotation release Status Assembly Chr Location
100 current P_latipinna-1.0 (GCF_001443285.1) Unplaced Scaffold NW_015112618.1 (1194527..1199627, complement)

NW_015112618.1Genomic Context describing neighboring genes Neighboring gene ATPase 13A3 Neighboring gene transmembrane protein 44 Neighboring gene family with sequence similarity 43 member A Neighboring gene uncharacterized LOC106954710

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_015112618.1 Unplaced Scaffold Reference P_latipinna-1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables GTP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables GTPase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in ribosomal subunit export from nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
large subunit GTPase 1 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Poecilia latipinna Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference P_latipinna-1.0

Genomic

  1. NW_015112618.1 Reference P_latipinna-1.0

    Range
    1194527..1199627 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015043929.1 → XP_014899415.1  large subunit GTPase 1 homolog

    UniProtKB/TrEMBL
    A0A3B3VU79
    Related
    ENSPLAP00000029345.1, ENSPLAT00000024246.1
    Conserved Domains (2) summary
    cd01857
    Location:163 → 422
    HSR1_MMR1; A circularly permuted subfamily of the Ras GTPases
    COG1161
    Location:138 → 530
    RbgA; Ribosome biogenesis GTPase A [Translation, ribosomal structure and biogenesis]
Nucleotide Protein
Heading Accession and Version

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