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rasef2 RAS and EF-hand domain containing 2 [ Poecilia latipinna (sailfin molly) ]

Gene ID: 106953400, updated on 13-Mar-2024

Summary

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Gene symbol
rasef2
Gene description
RAS and EF-hand domain containing 2
See related
Ensembl:ENSPLAG00000020643
Gene type
protein coding
RefSeq status
MODEL
Organism
Poecilia latipinna
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Poecilia
Also known as
zgc:162879
Orthologs
zebrafish all
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Genomic context

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See rasef2 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
17
Annotation release Status Assembly Chr Location
100 current P_latipinna-1.0 (GCF_001443285.1) Unplaced Scaffold NW_015113194.1 (238301..249404)

NW_015113194.1Genomic Context describing neighboring genes Neighboring gene zinc finger protein 710a Neighboring gene sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4Ba Neighboring gene FKBP prolyl isomerase 16 Neighboring gene RNA polymerase II elongation factor ELL-like Neighboring gene peroxisomal membrane protein 11A-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_015113194.1 Unplaced Scaffold Reference P_latipinna-1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables GTP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables GTPase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ras and EF-hand domain-containing protein-like
Names
ras and EF-hand domain-containing protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Poecilia latipinna Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference P_latipinna-1.0

Genomic

  1. NW_015113194.1 Reference P_latipinna-1.0

    Range
    238301..249404
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015042135.1 → XP_014897621.1  ras and EF-hand domain-containing protein-like isoform X2

    Conserved Domains (5) summary
    smart00175
    Location:467 → 634
    RAB; Rab subfamily of small GTPases
    cd00154
    Location:467 → 629
    Rab; Ras-related in brain (Rab) family of small guanosine triphosphatases (GTPases)
    pfam13499
    Location:13 → 67
    EF-hand_7; EF-hand domain pair
    cl08302
    Location:13 → 67
    EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...
    cl23720
    Location:133 → 295
    RILP-like; Rab interacting lysosomal protein-like 1 and 2 (Rilpl1 and Rilpl2)

  2. XM_015042136.1 → XP_014897622.1  ras and EF-hand domain-containing protein-like isoform X3

    Conserved Domains (5) summary
    smart00175
    Location:466 → 633
    RAB; Rab subfamily of small GTPases
    cd00154
    Location:466 → 628
    Rab; Ras-related in brain (Rab) family of small guanosine triphosphatases (GTPases)
    pfam06216
    Location:200 → 308
    RTBV_P46; Rice tungro bacilliform virus P46 protein
    pfam13499
    Location:13 → 67
    EF-hand_7; EF-hand domain pair
    cl08302
    Location:13 → 67
    EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...

  3. XM_015042134.1 → XP_014897620.1  ras and EF-hand domain-containing protein-like isoform X1

    UniProtKB/TrEMBL
    A0A3B3VZ49
    Related
    ENSPLAP00000029994.1, ENSPLAT00000025450.1
    Conserved Domains (5) summary
    smart00175
    Location:468 → 635
    RAB; Rab subfamily of small GTPases
    cd00154
    Location:468 → 630
    Rab; Ras-related in brain (Rab) family of small guanosine triphosphatases (GTPases)
    pfam13499
    Location:13 → 67
    EF-hand_7; EF-hand domain pair
    cl08302
    Location:13 → 67
    EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...
    cl23720
    Location:133 → 295
    RILP-like; Rab interacting lysosomal protein-like 1 and 2 (Rilpl1 and Rilpl2)
Nucleotide Protein
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