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LOC106951885 elongation factor 1-alpha 1 [ Poecilia latipinna (sailfin molly) ]

Gene ID: 106951885, updated on 2-Nov-2023

Summary

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Gene symbol
LOC106951885
Gene description
elongation factor 1-alpha 1
See related
Ensembl:ENSPLAG00000005287
Gene type
protein coding
RefSeq status
MODEL
Organism
Poecilia latipinna
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Poecilia
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Genomic context

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See LOC106951885 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
9
Annotation release Status Assembly Chr Location
100 current P_latipinna-1.0 (GCF_001443285.1) Unplaced Scaffold NW_015113094.1 (128927..135895)

NW_015113094.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC106951882 Neighboring gene arachidonate 12-lipoxygenase, 12R-type-like Neighboring gene TBC1 domain containing kinase Neighboring gene potassium voltage-gated channel, KQT-like subfamily, member 5b Neighboring gene regulating synaptic membrane exocytosis 1b

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_015113094.1 Unplaced Scaffold Reference P_latipinna-1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables GTP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables GTPase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables translation elongation factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in translation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in translational elongation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
elongation factor 1-alpha 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Poecilia latipinna Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference P_latipinna-1.0

Genomic

  1. NW_015113094.1 Reference P_latipinna-1.0

    Range
    128927..135895
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015039625.1 → XP_014895111.1  elongation factor 1-alpha 1

    UniProtKB/TrEMBL
    A0A3B3UZL6, A0A3B3V967
    Related
    ENSPLAP00000021492.1, ENSPLAT00000010849.1
    Conserved Domains (4) summary
    PTZ00141
    Location:1 → 460
    PTZ00141; elongation factor 1- alpha; Provisional
    cd01883
    Location:9 → 238
    EF1_alpha; Elongation Factor 1-alpha (EF1-alpha) protein family
    cd03693
    Location:242 → 332
    EF1_alpha_II; Domain II of elongation factor 1-alpha
    cd03705
    Location:336 → 438
    EF1_alpha_III; Domain III of Elongation Factor 1

  2. XM_015039626.1 → XP_014895112.1  elongation factor 1-alpha 1

    UniProtKB/TrEMBL
    A0A3B3UZL6, A0A3B3V967
    Conserved Domains (4) summary
    PTZ00141
    Location:1 → 460
    PTZ00141; elongation factor 1- alpha; Provisional
    cd01883
    Location:9 → 238
    EF1_alpha; Elongation Factor 1-alpha (EF1-alpha) protein family
    cd03693
    Location:242 → 332
    EF1_alpha_II; Domain II of elongation factor 1-alpha
    cd03705
    Location:336 → 438
    EF1_alpha_III; Domain III of Elongation Factor 1
Nucleotide Protein
Heading Accession and Version

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