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rif1 replication timing regulatory factor 1 [ Poecilia latipinna (sailfin molly) ]

Gene ID: 106947579, updated on 13-Mar-2024

Summary

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Gene symbol
rif1
Gene description
replication timing regulatory factor 1
See related
Ensembl:ENSPLAG00000017945
Gene type
protein coding
RefSeq status
MODEL
Organism
Poecilia latipinna
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Poecilia
Orthologs
human zebrafish all
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Genomic context

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See rif1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
36
Annotation release Status Assembly Chr Location
100 current P_latipinna-1.0 (GCF_001443285.1) Unplaced Scaffold NW_015112864.1 (2144..25544, complement)

NW_015112864.1Genomic Context describing neighboring genes Neighboring gene tumor necrosis factor, alpha-induced protein 6 Neighboring gene uncharacterized LOC106947582 Neighboring gene integrin, beta 5

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_015112864.1 Unplaced Scaffold Reference P_latipinna-1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in telomere maintenance IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
telomere-associated protein RIF1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Poecilia latipinna Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference P_latipinna-1.0

Genomic

  1. NW_015112864.1 Reference P_latipinna-1.0

    Range
    2144..25544 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015032674.1 → XP_014888160.1  telomere-associated protein RIF1 isoform X1

    UniProtKB/TrEMBL
    A0A3B3VT92
    Related
    ENSPLAP00000027610.1, ENSPLAT00000020774.1
    Conserved Domains (1) summary
    pfam12231
    Location:24 → 365
    Rif1_N; Rap1-interacting factor 1 N terminal

  2. XM_015032675.1 → XP_014888161.1  telomere-associated protein RIF1 isoform X2

    UniProtKB/TrEMBL
    A0A3B3VT92
    Related
    ENSPLAP00000012239.1, ENSPLAT00000019872.1
    Conserved Domains (1) summary
    pfam12231
    Location:24 → 365
    Rif1_N; Rap1-interacting factor 1 N terminal

  3. XM_015032676.1 → XP_014888162.1  telomere-associated protein RIF1 isoform X3

    UniProtKB/TrEMBL
    A0A3B3VT92
    Conserved Domains (1) summary
    pfam12231
    Location:24 → 365
    Rif1_N; Rap1-interacting factor 1 N terminal

  4. XM_015032673.1 → XP_014888159.1  telomere-associated protein RIF1 isoform X1

    UniProtKB/TrEMBL
    A0A3B3VT92
    Conserved Domains (1) summary
    pfam12231
    Location:24 → 365
    Rif1_N; Rap1-interacting factor 1 N terminal
Nucleotide Protein
Heading Accession and Version

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