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trmt2a tRNA methyltransferase 2 homolog A [ Poecilia latipinna (sailfin molly) ]

Gene ID: 106947316, updated on 13-Mar-2024

Summary

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Gene symbol
trmt2a
Gene description
tRNA methyltransferase 2 homolog A
See related
Ensembl:ENSPLAG00000002777
Gene type
protein coding
RefSeq status
MODEL
Organism
Poecilia latipinna
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Poecilia
Orthologs
human zebrafish all
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Genomic context

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See trmt2a in Genome Data Viewer
Location:
chromosome: Un
Exon count:
14
Annotation release Status Assembly Chr Location
100 current P_latipinna-1.0 (GCF_001443285.1) Unplaced Scaffold NW_015112850.1 (258113..265419, complement)

NW_015112850.1Genomic Context describing neighboring genes Neighboring gene transport and golgi organization 2 homolog (Drosophila) Neighboring gene DGCR8 microprocessor complex subunit Neighboring gene ran-specific GTPase-activating protein-like Neighboring gene RAN binding protein 1 Neighboring gene zinc finger DHHC-type palmitoyltransferase 8b Neighboring gene PGAM family member 5, serine/threonine protein phosphatase, mitochondrial

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_015112850.1 Unplaced Scaffold Reference P_latipinna-1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA methyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in RNA processing IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
tRNA (uracil-5-)-methyltransferase homolog A

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Poecilia latipinna Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference P_latipinna-1.0

Genomic

  1. NW_015112850.1 Reference P_latipinna-1.0

    Range
    258113..265419 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015032217.1 → XP_014887703.1  tRNA (uracil-5-)-methyltransferase homolog A

    UniProtKB/TrEMBL
    A0A3B3TM15
    Related
    ENSPLAP00000001672.1, ENSPLAT00000014348.1
    Conserved Domains (4) summary
    COG0724
    Location:27 → 162
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    COG2265
    Location:186 → 588
    TrmA; tRNA/tmRNA/rRNA uracil-C5-methylase, TrmA/RlmC/RlmD family [Translation, ribosomal structure and biogenesis]
    cd12439
    Location:59 → 137
    RRM_TRMT2A; RNA recognition motif in tRNA (uracil-5-)-methyltransferase homolog A (TRMT2A) and similar proteins
    cl17173
    Location:402 → 595
    AdoMet_MTases; S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). ...

  2. XM_015032219.1 → XP_014887705.1  tRNA (uracil-5-)-methyltransferase homolog A

    UniProtKB/TrEMBL
    A0A3B3TM15
    Conserved Domains (4) summary
    COG0724
    Location:27 → 162
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    COG2265
    Location:186 → 588
    TrmA; tRNA/tmRNA/rRNA uracil-C5-methylase, TrmA/RlmC/RlmD family [Translation, ribosomal structure and biogenesis]
    cd12439
    Location:59 → 137
    RRM_TRMT2A; RNA recognition motif in tRNA (uracil-5-)-methyltransferase homolog A (TRMT2A) and similar proteins
    cl17173
    Location:402 → 595
    AdoMet_MTases; S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). ...
Nucleotide Protein
Heading Accession and Version

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