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rab42b RAB42, member RAS oncogene family [ Poecilia latipinna (sailfin molly) ]

Gene ID: 106942786, updated on 13-Mar-2024

Summary

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Gene symbol
rab42b
Gene description
RAB42, member RAS oncogene family
See related
Ensembl:ENSPLAG00000007773
Gene type
protein coding
RefSeq status
MODEL
Organism
Poecilia latipinna
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Poecilia
Orthologs
zebrafish all
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Genomic context

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See rab42b in Genome Data Viewer
Location:
chromosome: Un
Exon count:
4
Annotation release Status Assembly Chr Location
100 current P_latipinna-1.0 (GCF_001443285.1) Unplaced Scaffold NW_015112713.1 (176457..181275)

NW_015112713.1Genomic Context describing neighboring genes Neighboring gene Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 4b Neighboring gene uncharacterized LOC106942813 Neighboring gene uncharacterized LOC106942820 Neighboring gene TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_015112713.1 Unplaced Scaffold Reference P_latipinna-1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables GTP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables GTPase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ras-related protein Rab-39B-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Poecilia latipinna Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference P_latipinna-1.0

Genomic

  1. NW_015112713.1 Reference P_latipinna-1.0

    Range
    176457..181275
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015026126.1 → XP_014881612.1  ras-related protein Rab-39B-like

    UniProtKB/TrEMBL
    A0A3B3TYT1
    Related
    ENSPLAP00000005783.1, ENSPLAT00000007349.1
    Conserved Domains (2) summary
    smart00175
    Location:10 → 176
    RAB; Rab subfamily of small GTPases
    cl21455
    Location:8 → 221
    P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases

  2. XM_015026144.1 → XP_014881630.1  ras-related protein Rab-39B-like

    UniProtKB/TrEMBL
    A0A3B3TYT1
    Conserved Domains (2) summary
    smart00175
    Location:10 → 176
    RAB; Rab subfamily of small GTPases
    cl21455
    Location:8 → 221
    P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases

  3. XM_015026139.1 → XP_014881625.1  ras-related protein Rab-39B-like

    UniProtKB/TrEMBL
    A0A3B3TYT1
    Conserved Domains (2) summary
    smart00175
    Location:10 → 176
    RAB; Rab subfamily of small GTPases
    cl21455
    Location:8 → 221
    P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases

  4. XM_015026133.1 → XP_014881619.1  ras-related protein Rab-39B-like

    UniProtKB/TrEMBL
    A0A3B3TYT1
    Conserved Domains (2) summary
    smart00175
    Location:10 → 176
    RAB; Rab subfamily of small GTPases
    cl21455
    Location:8 → 221
    P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases
Nucleotide Protein
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