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eefsec eukaryotic elongation factor, selenocysteine-tRNA-specific [ Poecilia latipinna (sailfin molly) ]

Gene ID: 106938344, updated on 13-Mar-2024

Summary

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Gene symbol
eefsec
Gene description
eukaryotic elongation factor, selenocysteine-tRNA-specific
See related
Ensembl:ENSPLAG00000018012
Gene type
protein coding
RefSeq status
MODEL
Organism
Poecilia latipinna
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Poecilia
Orthologs
human zebrafish all
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Genomic context

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See eefsec in Genome Data Viewer
Location:
chromosome: Un
Exon count:
9
Annotation release Status Assembly Chr Location
100 current P_latipinna-1.0 (GCF_001443285.1) Unplaced Scaffold NW_015115187.1 (15507..27855)

NW_015115187.1Genomic Context describing neighboring genes Neighboring gene musculoskeletal, embryonic nuclear protein 1a Neighboring gene RuvB-like AAA ATPase 1 Neighboring gene uncharacterized LOC106938343

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_015115187.1 Unplaced Scaffold Reference P_latipinna-1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables GTP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables GTPase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables translation elongation factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in selenocysteine incorporation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
selenocysteine-specific elongation factor

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Poecilia latipinna Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference P_latipinna-1.0

Genomic

  1. NW_015115187.1 Reference P_latipinna-1.0

    Range
    15507..27855
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015020363.1 → XP_014875849.1  selenocysteine-specific elongation factor isoform X1

    UniProtKB/TrEMBL
    A0A3B3UNL0
    Related
    ENSPLAP00000014326.1, ENSPLAT00000022622.1
    Conserved Domains (4) summary
    cd01889
    Location:14 → 206
    SelB_euk; SelB, the dedicated elongation factor for delivery of selenocysteinyl-tRNA to the ribosome
    pfam00009
    Location:15 → 213
    GTP_EFTU; Elongation factor Tu GTP binding domain
    cd03696
    Location:220 → 302
    SelB_II; Domain II of elongation factor SelB
    cd04094
    Location:307 → 433
    eSelB_III; Domain III of eukaryotic and archaeal elongation factor SelB

  2. XM_015020364.1 → XP_014875850.1  selenocysteine-specific elongation factor isoform X2

    UniProtKB/TrEMBL
    A0A3B3UN90
    Conserved Domains (4) summary
    cd01889
    Location:14 → 206
    SelB_euk; SelB, the dedicated elongation factor for delivery of selenocysteinyl-tRNA to the ribosome
    pfam00009
    Location:15 → 213
    GTP_EFTU; Elongation factor Tu GTP binding domain
    cd03696
    Location:220 → 302
    SelB_II; Domain II of elongation factor SelB
    cd04094
    Location:307 → 433
    eSelB_III; Domain III of eukaryotic and archaeal elongation factor SelB

  3. XM_015020365.1 → XP_014875851.1  selenocysteine-specific elongation factor isoform X3

    UniProtKB/TrEMBL
    A0A3B3UNL0
    Conserved Domains (3) summary
    cd03696
    Location:112 → 194
    SelB_II; Domain II of elongation factor SelB
    cd04094
    Location:199 → 325
    eSelB_III; Domain III of eukaryotic and archaeal elongation factor SelB
    cl21455
    Location:1 → 98
    P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases
Nucleotide Protein
Heading Accession and Version

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