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tmtc2a transmembrane O-mannosyltransferase targeting cadherins 2a [ Poecilia mexicana ]

Gene ID: 106933573, updated on 13-Mar-2024

Summary

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Gene symbol
tmtc2a
Gene description
transmembrane O-mannosyltransferase targeting cadherins 2a
See related
Ensembl:ENSPMEG00000007134
Gene type
protein coding
RefSeq status
MODEL
Organism
Poecilia mexicana
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Poecilia
Also known as
tmtc2
Orthologs
zebrafish all
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Genomic context

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See tmtc2a in Genome Data Viewer
Location:
chromosome: Un
Exon count:
12
Annotation release Status Assembly Chr Location
100 current P_mexicana-1.0 (GCF_001443325.1) Unplaced Scaffold NW_015096157.1 (77797..128066)

NW_015096157.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC106933578 Neighboring gene coiled-coil domain containing 59 Neighboring gene methyltransferase like 25 Neighboring gene uncharacterized LOC106933579 Neighboring gene poly [ADP-ribose] polymerase 11-like Neighboring gene poly [ADP-ribose] polymerase 11-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_015096157.1 Unplaced Scaffold Reference P_mexicana-1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mannosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein O-linked mannosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transmembrane and TPR repeat-containing protein 2
Names
transmembrane O-mannosyltransferase targeting cadherins 2
transmembrane and tetratricopeptide repeat containing 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Poecilia mexicana Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference P_mexicana-1.0

Genomic

  1. NW_015096157.1 Reference P_mexicana-1.0

    Range
    77797..128066
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015012893.1 → XP_014868379.1  transmembrane and TPR repeat-containing protein 2

    UniProtKB/TrEMBL
    A0A3B3YBB6
    Related
    ENSPMEP00000024647.1, ENSPMET00000007074.1
    Conserved Domains (5) summary
    COG0457
    Location:461 → 739
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:508 → 536
    TPR; TPR repeat [structural motif]
    pfam00515
    Location:508 → 535
    TPR_1; Tetratricopeptide repeat
    pfam08409
    Location:262 → 336
    DUF1736; Domain of unknown function (DUF1736)
    pfam13432
    Location:766 → 828
    TPR_16; Tetratricopeptide repeat

RNA

  1. XR_001421514.1 RNA Sequence

  2. XR_001421513.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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