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LOC106931561 kin of IRRE-like protein 1 [ Poecilia mexicana ]

Gene ID: 106931561, updated on 2-Nov-2023

Summary

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Gene symbol
LOC106931561
Gene description
kin of IRRE-like protein 1
See related
Ensembl:ENSPMEG00000007949
Gene type
protein coding
RefSeq status
MODEL
Organism
Poecilia mexicana
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Poecilia
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Genomic context

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See LOC106931561 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
15
Annotation release Status Assembly Chr Location
100 current P_mexicana-1.0 (GCF_001443325.1) Unplaced Scaffold NW_015095894.1 (12443..130081, complement)

NW_015095894.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC106931562 Neighboring gene cell adhesion molecule 3-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_015095894.1 Unplaced Scaffold Reference P_mexicana-1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cell adhesion molecule binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell-cell junction IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
kin of IRRE-like protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Poecilia mexicana Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference P_mexicana-1.0

Genomic

  1. NW_015095894.1 Reference P_mexicana-1.0

    Range
    12443..130081 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015009745.1 → XP_014865231.1  kin of IRRE-like protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A3B3YCP2
    Conserved Domains (8) summary
    cd05898
    Location:389 → 492
    Ig5_KIRREL3; Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2)
    PHA02682
    Location:570 → 759
    PHA02682; ORF080 virion core protein; Provisional
    smart00408
    Location:321 → 371
    IGc2; Immunoglobulin C-2 Type
    smart00410
    Location:25 → 114
    IG_like; Immunoglobulin like
    pfam07679
    Location:306 → 387
    I-set; Immunoglobulin I-set domain
    pfam03957
    Location:646 → 719
    Jun; Jun-like transcription factor
    pfam13927
    Location:224 → 289
    Ig_3; Immunoglobulin domain
    cl11960
    Location:137 → 217
    Ig; Immunoglobulin domain

  2. XM_015009746.1 → XP_014865232.1  kin of IRRE-like protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A3B3YCP2
    Related
    ENSPMEP00000025127.1, ENSPMET00000005860.1
    Conserved Domains (8) summary
    cd05898
    Location:389 → 492
    Ig5_KIRREL3; Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2)
    PHA02682
    Location:587 → 747
    PHA02682; ORF080 virion core protein; Provisional
    smart00410
    Location:25 → 114
    IG_like; Immunoglobulin like
    pfam07679
    Location:306 → 387
    I-set; Immunoglobulin I-set domain
    pfam03957
    Location:634 → 707
    Jun; Jun-like transcription factor
    pfam13895
    Location:306 → 387
    Ig_2; Immunoglobulin domain
    pfam13927
    Location:224 → 289
    Ig_3; Immunoglobulin domain
    cl11960
    Location:137 → 217
    Ig; Immunoglobulin domain
Nucleotide Protein
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