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kirrel3 kirre like nephrin family adhesion molecule 3 [ Poecilia mexicana ]

Gene ID: 106930561, updated on 2-Nov-2023

Summary

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Gene symbol
kirrel3
Gene description
kirre like nephrin family adhesion molecule 3
Gene type
protein coding
RefSeq status
MODEL
Organism
Poecilia mexicana
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Poecilia
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Genomic context

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See kirrel3 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
15
Annotation release Status Assembly Chr Location
100 current P_mexicana-1.0 (GCF_001443325.1) Unplaced Scaffold NW_015095762.1 (15220..117608, complement)

NW_015095762.1Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_015095762.1 Unplaced Scaffold Reference P_mexicana-1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cell adhesion molecule binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in synapse assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell-cell junction IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
kin of IRRE-like protein 3
Names
kin of IRRE like 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Poecilia mexicana Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference P_mexicana-1.0

Genomic

  1. NW_015095762.1 Reference P_mexicana-1.0

    Range
    15220..117608 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015008191.1 → XP_014863677.1  kin of IRRE-like protein 3 isoform X3

    UniProtKB/TrEMBL
    A0A3B3XLY7
    Conserved Domains (7) summary
    cd05759
    Location:117 → 202
    Ig2_KIRREL3-like; Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)
    cd05898
    Location:374 → 471
    Ig5_KIRREL3; Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2)
    smart00408
    Location:305 → 356
    IGc2; Immunoglobulin C-2 Type
    smart00410
    Location:6 → 95
    IG_like; Immunoglobulin like
    pfam07679
    Location:291 → 372
    I-set; Immunoglobulin I-set domain
    pfam13895
    Location:210 → 287
    Ig_2; Immunoglobulin domain
    cl11960
    Location:4 → 95
    Ig; Immunoglobulin domain

  2. XM_015008194.1 → XP_014863680.1  kin of IRRE-like protein 3 isoform X5

    UniProtKB/TrEMBL
    A0A3B3XLY7
    Conserved Domains (7) summary
    cd05759
    Location:117 → 198
    Ig2_KIRREL3-like; Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)
    cd05898
    Location:370 → 467
    Ig5_KIRREL3; Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2)
    smart00408
    Location:301 → 352
    IGc2; Immunoglobulin C-2 Type
    smart00410
    Location:6 → 95
    IG_like; Immunoglobulin like
    pfam07679
    Location:287 → 368
    I-set; Immunoglobulin I-set domain
    pfam13895
    Location:206 → 283
    Ig_2; Immunoglobulin domain
    cl11960
    Location:4 → 95
    Ig; Immunoglobulin domain

  3. XM_015008190.1 → XP_014863676.1  kin of IRRE-like protein 3 isoform X2

    UniProtKB/TrEMBL
    A0A3B3XLY7
    Conserved Domains (7) summary
    cd05759
    Location:117 → 198
    Ig2_KIRREL3-like; Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)
    cd05898
    Location:370 → 467
    Ig5_KIRREL3; Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2)
    smart00408
    Location:301 → 352
    IGc2; Immunoglobulin C-2 Type
    smart00410
    Location:6 → 95
    IG_like; Immunoglobulin like
    pfam07679
    Location:287 → 368
    I-set; Immunoglobulin I-set domain
    pfam13895
    Location:206 → 283
    Ig_2; Immunoglobulin domain
    cl11960
    Location:4 → 95
    Ig; Immunoglobulin domain

  4. XM_015008193.1 → XP_014863679.1  kin of IRRE-like protein 3 isoform X4

    UniProtKB/TrEMBL
    A0A3B3XLY7
    Conserved Domains (7) summary
    cd05759
    Location:117 → 202
    Ig2_KIRREL3-like; Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)
    cd05898
    Location:374 → 471
    Ig5_KIRREL3; Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2)
    smart00408
    Location:305 → 356
    IGc2; Immunoglobulin C-2 Type
    smart00410
    Location:6 → 95
    IG_like; Immunoglobulin like
    pfam07679
    Location:291 → 372
    I-set; Immunoglobulin I-set domain
    pfam13895
    Location:210 → 287
    Ig_2; Immunoglobulin domain
    cl11960
    Location:4 → 95
    Ig; Immunoglobulin domain

  5. XM_015008189.1 → XP_014863675.1  kin of IRRE-like protein 3 isoform X1

    UniProtKB/TrEMBL
    A0A3B3XLY7
    Conserved Domains (7) summary
    cd05759
    Location:117 → 202
    Ig2_KIRREL3-like; Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)
    cd05898
    Location:374 → 471
    Ig5_KIRREL3; Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2)
    smart00408
    Location:305 → 356
    IGc2; Immunoglobulin C-2 Type
    smart00410
    Location:6 → 95
    IG_like; Immunoglobulin like
    pfam07679
    Location:291 → 372
    I-set; Immunoglobulin I-set domain
    pfam13895
    Location:210 → 287
    Ig_2; Immunoglobulin domain
    cl11960
    Location:4 → 95
    Ig; Immunoglobulin domain
Nucleotide Protein
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