U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

galnt18b UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 18b [ Poecilia mexicana ]

Gene ID: 106923858, updated on 13-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
galnt18b
Gene description
UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 18b
See related
Ensembl:ENSPMEG00000021407
Gene type
protein coding
RefSeq status
MODEL
Organism
Poecilia mexicana
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Poecilia
Also known as
galnt18
Orthologs
human zebrafish all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See galnt18b in Genome Data Viewer
Location:
chromosome: Un
Exon count:
13
Annotation release Status Assembly Chr Location
100 current P_mexicana-1.0 (GCF_001443325.1) Unplaced Scaffold NW_015095166.1 (237362..344015, complement)

NW_015095166.1Genomic Context describing neighboring genes Neighboring gene eukaryotic translation initiation factor 4, gamma 2a Neighboring gene CTR9 homolog, Paf1/RNA polymerase II complex component Neighboring gene BTB (POZ) domain containing 10b Neighboring gene ras association domain-containing protein 10-like

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NW_015095166.1 Unplaced Scaffold Reference P_mexicana-1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
polypeptide N-acetylgalactosaminyltransferase 18

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Poecilia mexicana Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference P_mexicana-1.0

Genomic

  1. NW_015095166.1 Reference P_mexicana-1.0

    Range
    237362..344015 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014997194.1 → XP_014852680.1  polypeptide N-acetylgalactosaminyltransferase 18 isoform X1

    UniProtKB/TrEMBL
    A0A3B3XU34
    Related
    ENSPMEP00000018438.1, ENSPMET00000034207.1
    Conserved Domains (4) summary
    cd02510
    Location:159 → 460
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    cd00161
    Location:473 → 600
    RICIN; Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ...
    pfam00652
    Location:471 → 598
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain
    pfam10111
    Location:160 → 421
    Glyco_tranf_2_2; Glycosyltransferase like family 2

  2. XM_014997195.1 → XP_014852681.1  polypeptide N-acetylgalactosaminyltransferase 18 isoform X2

    Conserved Domains (4) summary
    cd02510
    Location:37 → 338
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    cd00161
    Location:351 → 478
    RICIN; Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ...
    pfam00652
    Location:349 → 476
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain
    pfam10111
    Location:38 → 299
    Glyco_tranf_2_2; Glycosyltransferase like family 2

  3. XM_014997196.1 → XP_014852682.1  polypeptide N-acetylgalactosaminyltransferase 18 isoform X3

    Conserved Domains (4) summary
    cd02510
    Location:20 → 321
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    cd00161
    Location:334 → 461
    RICIN; Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ...
    pfam00652
    Location:332 → 459
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain
    pfam10111
    Location:21 → 282
    Glyco_tranf_2_2; Glycosyltransferase like family 2
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.