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galnt13 polypeptide N-acetylgalactosaminyltransferase 13 [ Poecilia mexicana ]

Gene ID: 106923835, updated on 18-Aug-2024

Summary

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Gene symbol
galnt13
Gene description
polypeptide N-acetylgalactosaminyltransferase 13
See related
Ensembl:ENSPMEG00000022290
Gene type
protein coding
RefSeq status
MODEL
Organism
Poecilia mexicana
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Poecilia
Orthologs
human zebrafish all
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Genomic context

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See galnt13 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
14
Annotation release Status Assembly Chr Location
100 current P_mexicana-1.0 (GCF_001443325.1) Unplaced Scaffold NW_015094543.1 (550283..594446, complement)

NW_015094543.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC106923677 Neighboring gene potassium inwardly rectifying channel subfamily J member 3a Neighboring gene reprimo, TP53 dependent G2 arrest mediator candidate a Neighboring gene PRP40 pre-mRNA processing factor 40 homolog A

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_015094543.1 Unplaced Scaffold Reference P_mexicana-1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
polypeptide N-acetylgalactosaminyltransferase 13
Names
UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 13

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Poecilia mexicana Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference P_mexicana-1.0

Genomic

  1. NW_015094543.1 Reference P_mexicana-1.0

    Range
    550283..594446 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014997178.1 → XP_014852664.1  polypeptide N-acetylgalactosaminyltransferase 13 isoform X3

    UniProtKB/TrEMBL
    A0A3B3XWD8, A0A3B3XWF3
    Related
    ENSPMEP00000019235.1, ENSPMET00000028574.1
    Conserved Domains (4) summary
    cd02510
    Location:118 → 418
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    cd00161
    Location:431 → 549
    RICIN; Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ...
    pfam00652
    Location:431 → 547
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain
    pfam13641
    Location:115 → 359
    Glyco_tranf_2_3; Glycosyltransferase like family 2

  2. XM_014997160.1 → XP_014852646.1  polypeptide N-acetylgalactosaminyltransferase 13 isoform X1

    UniProtKB/TrEMBL
    A0A3B3XWD8
    Conserved Domains (4) summary
    cd02510
    Location:118 → 418
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    cd00161
    Location:431 → 560
    RICIN; Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ...
    pfam00652
    Location:431 → 558
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain
    pfam13641
    Location:115 → 359
    Glyco_tranf_2_3; Glycosyltransferase like family 2

  3. XM_014997150.1 → XP_014852636.1  polypeptide N-acetylgalactosaminyltransferase 13 isoform X1

    UniProtKB/TrEMBL
    A0A3B3XWD8
    Conserved Domains (4) summary
    cd02510
    Location:118 → 418
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    cd00161
    Location:431 → 560
    RICIN; Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ...
    pfam00652
    Location:431 → 558
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain
    pfam13641
    Location:115 → 359
    Glyco_tranf_2_3; Glycosyltransferase like family 2

  4. XM_014997169.1 → XP_014852655.1  polypeptide N-acetylgalactosaminyltransferase 13 isoform X2

    UniProtKB/TrEMBL
    A0A3B3XWD8, A0A3B3XWF5
    Related
    ENSPMEP00000019248.1, ENSPMET00000028592.1
    Conserved Domains (4) summary
    cd02510
    Location:118 → 418
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    cd00161
    Location:431 → 550
    RICIN; Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ...
    pfam00652
    Location:431 → 548
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain
    pfam13641
    Location:115 → 359
    Glyco_tranf_2_3; Glycosyltransferase like family 2
Nucleotide Protein
Heading Accession and Version

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