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hs6st3b heparan sulfate 6-O-sulfotransferase 3b [ Poecilia mexicana ]

Gene ID: 106923037, updated on 13-Mar-2024

Summary

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Gene symbol
hs6st3b
Gene description
heparan sulfate 6-O-sulfotransferase 3b
See related
Ensembl:ENSPMEG00000001103
Gene type
protein coding
RefSeq status
MODEL
Organism
Poecilia mexicana
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Poecilia
Orthologs
human zebrafish all
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Genomic context

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See hs6st3b in Genome Data Viewer
Location:
chromosome: Un
Exon count:
3
Annotation release Status Assembly Chr Location
100 current P_mexicana-1.0 (GCF_001443325.1) Unplaced Scaffold NW_015094541.1 (464475..539451)

NW_015094541.1Genomic Context describing neighboring genes Neighboring gene DnaJ (Hsp40) homolog, subfamily C, member 3a Neighboring gene UDP-glucose glycoprotein glucosyltransferase 2 Neighboring gene muscleblind-like protein 2a Neighboring gene ras-related protein Rap-2a

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_015094541.1 Unplaced Scaffold Reference P_mexicana-1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables heparan sulfate 6-O-sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in heparan sulfate proteoglycan biosynthetic process, enzymatic modification IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
heparan-sulfate 6-O-sulfotransferase 3-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Poecilia mexicana Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference P_mexicana-1.0

Genomic

  1. NW_015094541.1 Reference P_mexicana-1.0

    Range
    464475..539451
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014995883.1 → XP_014851369.1  heparan-sulfate 6-O-sulfotransferase 3-like isoform X2

    UniProtKB/TrEMBL
    A0A3B3WBP4
    Conserved Domains (1) summary
    pfam03567
    Location:93 → 356
    Sulfotransfer_2; Sulfotransferase family

  2. XM_014995872.1 → XP_014851358.1  heparan-sulfate 6-O-sulfotransferase 3-like isoform X1

    UniProtKB/TrEMBL
    A0A3B3WBP4, A0A3B3Y1X9
    Related
    ENSPMEP00000021120.1, ENSPMET00000016053.1
    Conserved Domains (1) summary
    pfam03567
    Location:93 → 356
    Sulfotransfer_2; Sulfotransferase family
Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases