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galnt17 polypeptide N-acetylgalactosaminyltransferase 17 [ Poecilia mexicana ]

Gene ID: 106921832, updated on 12-Sep-2024

Summary

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Gene symbol
galnt17
Gene description
polypeptide N-acetylgalactosaminyltransferase 17
See related
Ensembl:ENSPMEG00000019333
Gene type
protein coding
RefSeq status
MODEL
Organism
Poecilia mexicana
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Poecilia
Also known as
wbscr17
Orthologs
zebrafish all
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Genomic context

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See galnt17 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
12
Annotation release Status Assembly Chr Location
100 current P_mexicana-1.0 (GCF_001443325.1) Unplaced Scaffold NW_015094512.1 (983770..1009297, complement)

NW_015094512.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC106922948 Neighboring gene uncharacterized LOC106923094 Neighboring gene calneuron 1 Neighboring gene uncharacterized LOC106923041 Neighboring gene rhomboid domain containing 1 Neighboring gene EMAP like 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_015094512.1 Unplaced Scaffold Reference P_mexicana-1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
putative polypeptide N-acetylgalactosaminyltransferase-like protein 3
Names
Williams-Beuren syndrome chromosome region 17

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Poecilia mexicana Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference P_mexicana-1.0

Genomic

  1. NW_015094512.1 Reference P_mexicana-1.0

    Range
    983770..1009297 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014993818.1 → XP_014849304.1  putative polypeptide N-acetylgalactosaminyltransferase-like protein 3

    UniProtKB/TrEMBL
    A0A3B3XNU8
    Related
    ENSPMEP00000016615.1, ENSPMET00000025285.1
    Conserved Domains (4) summary
    cd02510
    Location:192 → 491
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    COG1215
    Location:187 → 414
    BcsA; Glycosyltransferase, catalytic subunit of cellulose synthase and poly-beta-1,6-N-acetylglucosamine synthase [Cell motility]
    cd00161
    Location:504 → 629
    RICIN; Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ...
    pfam00652
    Location:502 → 627
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain
Nucleotide Protein
Heading Accession and Version

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