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kirrel1a kirre like nephrin family adhesion molecule 1a [ Poecilia mexicana ]

Gene ID: 106920525, updated on 13-Mar-2024

Summary

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Gene symbol
kirrel1a
Gene description
kirre like nephrin family adhesion molecule 1a
See related
Ensembl:ENSPMEG00000021586
Gene type
protein coding
RefSeq status
MODEL
Organism
Poecilia mexicana
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Poecilia
Orthologs
zebrafish all
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Genomic context

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See kirrel1a in Genome Data Viewer
Location:
chromosome: Un
Exon count:
15
Annotation release Status Assembly Chr Location
100 current P_mexicana-1.0 (GCF_001443325.1) Unplaced Scaffold NW_015094937.1 (297464..344239)

NW_015094937.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC106920523 Neighboring gene interleukin 13 receptor, alpha 1 Neighboring gene uncharacterized LOC106920527 Neighboring gene uncharacterized LOC106920528 Neighboring gene NADH:ubiquinone oxidoreductase core subunit S2

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_015094937.1 Unplaced Scaffold Reference P_mexicana-1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cell adhesion molecule binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell-cell junction IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
kin of IRRE-like protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Poecilia mexicana Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference P_mexicana-1.0

Genomic

  1. NW_015094937.1 Reference P_mexicana-1.0

    Range
    297464..344239
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014991574.1 → XP_014847060.1  kin of IRRE-like protein 1 isoform X2

    Conserved Domains (6) summary
    cd05898
    Location:389 → 492
    Ig5_KIRREL3; Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2)
    smart00410
    Location:312 → 387
    IG_like; Immunoglobulin like
    pfam07679
    Location:121 → 217
    I-set; Immunoglobulin I-set domain
    pfam13895
    Location:306 → 387
    Ig_2; Immunoglobulin domain
    pfam13927
    Location:224 → 289
    Ig_3; Immunoglobulin domain
    cl11960
    Location:137 → 217
    Ig; Immunoglobulin domain

  2. XM_014991573.1 → XP_014847059.1  kin of IRRE-like protein 1 isoform X1

    Conserved Domains (6) summary
    cd05898
    Location:390 → 493
    Ig5_KIRREL3; Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2)
    smart00410
    Location:313 → 388
    IG_like; Immunoglobulin like
    pfam07679
    Location:122 → 218
    I-set; Immunoglobulin I-set domain
    pfam13895
    Location:307 → 388
    Ig_2; Immunoglobulin domain
    pfam13927
    Location:225 → 290
    Ig_3; Immunoglobulin domain
    cl11960
    Location:138 → 218
    Ig; Immunoglobulin domain

  3. XM_014991576.1 → XP_014847062.1  kin of IRRE-like protein 1 isoform X3

    UniProtKB/TrEMBL
    A0A3B3Z0Q8
    Related
    ENSPMEP00000033212.1, ENSPMET00000034286.1
    Conserved Domains (6) summary
    cd05898
    Location:390 → 493
    Ig5_KIRREL3; Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2)
    smart00410
    Location:313 → 388
    IG_like; Immunoglobulin like
    pfam07679
    Location:122 → 218
    I-set; Immunoglobulin I-set domain
    pfam13895
    Location:307 → 388
    Ig_2; Immunoglobulin domain
    pfam13927
    Location:225 → 290
    Ig_3; Immunoglobulin domain
    cl11960
    Location:138 → 218
    Ig; Immunoglobulin domain
Nucleotide Protein
Heading Accession and Version

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