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LOC106910902 host cell factor 1-like [ Poecilia mexicana ]

Gene ID: 106910902, updated on 2-Nov-2023

Summary

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Gene symbol
LOC106910902
Gene description
host cell factor 1-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Poecilia mexicana
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Poecilia
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Genomic context

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See LOC106910902 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
28
Annotation release Status Assembly Chr Location
100 current P_mexicana-1.0 (GCF_001443325.1) Unplaced Scaffold NW_015098286.1 (19756..34237, complement)

NW_015098286.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC106910903 Neighboring gene interleukin-1 receptor-associated kinase 1-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_015098286.1 Unplaced Scaffold Reference P_mexicana-1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription coactivator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chromatin remodeling IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of histone methyltransferase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
host cell factor 1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Poecilia mexicana Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference P_mexicana-1.0

Genomic

  1. NW_015098286.1 Reference P_mexicana-1.0

    Range
    19756..34237 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014977609.1 → XP_014833095.1  host cell factor 1-like isoform X6

    Conserved Domains (3) summary
    cd00063
    Location:1146 → 1209
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    sd00038
    Location:101 → 146
    Kelch; KELCH repeat [structural motif]
    pfam13415
    Location:116 → 162
    Kelch_3; Galactose oxidase, central domain

  2. XM_014977605.1 → XP_014833091.1  host cell factor 1-like isoform X2

    Conserved Domains (5) summary
    PLN02153
    Location:9 → 327
    PLN02153; epithiospecifier protein
    cd00063
    Location:1240 → 1303
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    sd00038
    Location:196 → 241
    Kelch; KELCH repeat [structural motif]
    pfam01344
    Location:28 → 65
    Kelch_1; Kelch motif
    pfam13415
    Location:211 → 257
    Kelch_3; Galactose oxidase, central domain

  3. XM_014977604.1 → XP_014833090.1  host cell factor 1-like isoform X1

    Conserved Domains (5) summary
    PLN02153
    Location:9 → 327
    PLN02153; epithiospecifier protein
    cd00063
    Location:1241 → 1304
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    sd00038
    Location:196 → 241
    Kelch; KELCH repeat [structural motif]
    pfam01344
    Location:28 → 65
    Kelch_1; Kelch motif
    pfam13415
    Location:211 → 257
    Kelch_3; Galactose oxidase, central domain

  4. XM_014977607.1 → XP_014833093.1  host cell factor 1-like isoform X4

    Conserved Domains (5) summary
    PLN02153
    Location:9 → 327
    PLN02153; epithiospecifier protein
    cd00063
    Location:1215 → 1278
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    sd00038
    Location:196 → 241
    Kelch; KELCH repeat [structural motif]
    pfam01344
    Location:28 → 65
    Kelch_1; Kelch motif
    pfam13415
    Location:211 → 257
    Kelch_3; Galactose oxidase, central domain

  5. XM_014977606.1 → XP_014833092.1  host cell factor 1-like isoform X3

    Conserved Domains (5) summary
    PLN02153
    Location:9 → 327
    PLN02153; epithiospecifier protein
    cd00063
    Location:1216 → 1279
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    sd00038
    Location:196 → 241
    Kelch; KELCH repeat [structural motif]
    pfam01344
    Location:28 → 65
    Kelch_1; Kelch motif
    pfam13415
    Location:211 → 257
    Kelch_3; Galactose oxidase, central domain

  6. XM_014977608.1 → XP_014833094.1  host cell factor 1-like isoform X5

    Conserved Domains (5) summary
    PLN02153
    Location:9 → 327
    PLN02153; epithiospecifier protein
    cd00063
    Location:1189 → 1252
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    sd00038
    Location:196 → 241
    Kelch; KELCH repeat [structural motif]
    pfam01344
    Location:28 → 65
    Kelch_1; Kelch motif
    pfam13415
    Location:211 → 257
    Kelch_3; Galactose oxidase, central domain
Nucleotide Protein
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