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CTR9 CTR9 homolog, Paf1/RNA polymerase II complex component [ Calidris pugnax (ruff) ]

Gene ID: 106902950, updated on 3-Aug-2024

Summary

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Gene symbol
CTR9
Gene description
CTR9 homolog, Paf1/RNA polymerase II complex component
See related
Ensembl:ENSCPUG00000014706
Gene type
protein coding
RefSeq status
MODEL
Organism
Calidris pugnax
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Charadriiformes; Scolopacidae; Calidris
Orthologs
human mouse all
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Genomic context

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See CTR9 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
25
Annotation release Status Assembly Chr Location
100 current ASM143184v1 (GCF_001431845.1) Unplaced Scaffold NW_015090765.1 (1086862..1110429)

NW_015090765.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC106902940 Neighboring gene inositol 1,4,5-triphosphate receptor associated 1 Neighboring gene eukaryotic translation initiation factor 4 gamma 2 Neighboring gene polypeptide N-acetylgalactosaminyltransferase 18

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_015090765.1 Unplaced Scaffold Reference ASM143184v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA polymerase II complex binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of Cdc73/Paf1 complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
RNA polymerase-associated protein CTR9 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Calidris pugnax Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM143184v1

Genomic

  1. NW_015090765.1 Reference ASM143184v1

    Range
    1086862..1110429
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014935952.1 → XP_014791438.1  RNA polymerase-associated protein CTR9 homolog

    Related
    ENSCPUP00000021612.1, ENSCPUT00000025547.1
    Conserved Domains (6) summary
    TIGR02795
    Location:310 → 420
    tol_pal_ybgF; tol-pal system protein YbgF
    sd00006
    Location:501 → 525
    TPR; TPR repeat [structural motif]
    pfam13414
    Location:165 → 228
    TPR_11; TPR repeat
    pfam13424
    Location:498 → 563
    TPR_12; Tetratricopeptide repeat
    pfam14797
    Location:1054 → 1157
    SEEEED; Serine-rich region of AP3B1, clathrin-adaptor complex
    pfam15230
    Location:1054 → 1111
    SRRM_C; Serine/arginine repetitive matrix protein C-terminus
Nucleotide Protein
Heading Accession and Version

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