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ABLIM2 actin binding LIM protein family member 2 [ Calidris pugnax (ruff) ]

Gene ID: 106902949, updated on 3-Aug-2024

Summary

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Gene symbol
ABLIM2
Gene description
actin binding LIM protein family member 2
See related
Ensembl:ENSCPUG00000003125
Gene type
protein coding
RefSeq status
MODEL
Organism
Calidris pugnax
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Charadriiformes; Scolopacidae; Calidris
Orthologs
human mouse all
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Genomic context

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See ABLIM2 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
22
Annotation release Status Assembly Chr Location
100 current ASM143184v1 (GCF_001431845.1) Unplaced Scaffold NW_015090793.1 (3783240..3893712, complement)

NW_015090793.1Genomic Context describing neighboring genes Neighboring gene sortilin related VPS10 domain containing receptor 2 Neighboring gene actin filament associated protein 1 Neighboring gene SH3 domain and tetratricopeptide repeats 1 Neighboring gene HtrA serine peptidase 3

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_015090793.1 Unplaced Scaffold Reference ASM143184v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables actin filament binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cytoskeleton organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in lamellipodium assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in actin cytoskeleton IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
actin-binding LIM protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Calidris pugnax Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM143184v1

Genomic

  1. NW_015090793.1 Reference ASM143184v1

    Range
    3783240..3893712 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014935953.1 → XP_014791439.1  actin-binding LIM protein 2 isoform X7

    Related
    ENSCPUP00000004211.1, ENSCPUT00000005094.1
    Conserved Domains (6) summary
    cd09327
    Location:26 → 77
    LIM1_abLIM; The first LIM domain of actin binding LIM (abLIM) proteins
    cd09328
    Location:82 → 137
    LIM2_abLIM; The second LIM domain on actin binding LIM (abLIM) proteins
    cd09329
    Location:155 → 206
    LIM3_abLIM; The third LIM domain of actin binding LIM (abLIM) proteins
    cd09330
    Location:214 → 269
    LIM4_abLIM; The fourth LIM domain of actin binding LIM (abLIM) proteins
    pfam02209
    Location:644 → 678
    VHP; Villin headpiece domain
    pfam16182
    Location:279 → 642
    AbLIM_anchor; Putative adherens-junction anchoring region of AbLIM

  2. XM_014966838.1 → XP_014822324.1  actin-binding LIM protein 2 isoform X5

    Related
    ENSCPUP00000004195.1, ENSCPUT00000005078.1
    Conserved Domains (6) summary
    cd09327
    Location:26 → 77
    LIM1_abLIM; The first LIM domain of actin binding LIM (abLIM) proteins
    cd09328
    Location:82 → 137
    LIM2_abLIM; The second LIM domain on actin binding LIM (abLIM) proteins
    cd09329
    Location:155 → 206
    LIM3_abLIM; The third LIM domain of actin binding LIM (abLIM) proteins
    cd09330
    Location:214 → 269
    LIM4_abLIM; The fourth LIM domain of actin binding LIM (abLIM) proteins
    pfam02209
    Location:559 → 593
    VHP; Villin headpiece domain
    pfam16182
    Location:279 → 557
    AbLIM_anchor; Putative adherens-junction anchoring region of AbLIM

  3. XM_014935956.1 → XP_014791442.1  actin-binding LIM protein 2 isoform X10

    Conserved Domains (6) summary
    cd09327
    Location:26 → 77
    LIM1_abLIM; The first LIM domain of actin binding LIM (abLIM) proteins
    cd09328
    Location:82 → 137
    LIM2_abLIM; The second LIM domain on actin binding LIM (abLIM) proteins
    cd09329
    Location:155 → 206
    LIM3_abLIM; The third LIM domain of actin binding LIM (abLIM) proteins
    cd09330
    Location:214 → 269
    LIM4_abLIM; The fourth LIM domain of actin binding LIM (abLIM) proteins
    pfam02209
    Location:529 → 563
    VHP; Villin headpiece domain
    pfam16182
    Location:279 → 527
    AbLIM_anchor; Putative adherens-junction anchoring region of AbLIM

  4. XM_014966839.1 → XP_014822325.1  actin-binding LIM protein 2 isoform X6

    Conserved Domains (6) summary
    cd09327
    Location:26 → 77
    LIM1_abLIM; The first LIM domain of actin binding LIM (abLIM) proteins
    cd09328
    Location:82 → 137
    LIM2_abLIM; The second LIM domain on actin binding LIM (abLIM) proteins
    cd09329
    Location:155 → 206
    LIM3_abLIM; The third LIM domain of actin binding LIM (abLIM) proteins
    cd09330
    Location:214 → 269
    LIM4_abLIM; The fourth LIM domain of actin binding LIM (abLIM) proteins
    pfam02209
    Location:548 → 582
    VHP; Villin headpiece domain
    pfam16182
    Location:279 → 546
    AbLIM_anchor; Putative adherens-junction anchoring region of AbLIM

  5. XM_014935955.1 → XP_014791441.1  actin-binding LIM protein 2 isoform X9

    Conserved Domains (6) summary
    cd09327
    Location:26 → 77
    LIM1_abLIM; The first LIM domain of actin binding LIM (abLIM) proteins
    cd09328
    Location:82 → 137
    LIM2_abLIM; The second LIM domain on actin binding LIM (abLIM) proteins
    cd09329
    Location:155 → 206
    LIM3_abLIM; The third LIM domain of actin binding LIM (abLIM) proteins
    cd09330
    Location:214 → 269
    LIM4_abLIM; The fourth LIM domain of actin binding LIM (abLIM) proteins
    pfam02209
    Location:581 → 615
    VHP; Villin headpiece domain
    pfam16182
    Location:279 → 579
    AbLIM_anchor; Putative adherens-junction anchoring region of AbLIM

  6. XM_014966837.1 → XP_014822323.1  actin-binding LIM protein 2 isoform X4

    Conserved Domains (6) summary
    cd09327
    Location:26 → 77
    LIM1_abLIM; The first LIM domain of actin binding LIM (abLIM) proteins
    cd09328
    Location:82 → 137
    LIM2_abLIM; The second LIM domain on actin binding LIM (abLIM) proteins
    cd09329
    Location:155 → 206
    LIM3_abLIM; The third LIM domain of actin binding LIM (abLIM) proteins
    cd09330
    Location:214 → 269
    LIM4_abLIM; The fourth LIM domain of actin binding LIM (abLIM) proteins
    pfam02209
    Location:600 → 634
    VHP; Villin headpiece domain
    pfam16182
    Location:279 → 598
    AbLIM_anchor; Putative adherens-junction anchoring region of AbLIM

  7. XM_014935954.1 → XP_014791440.1  actin-binding LIM protein 2 isoform X8

    Related
    ENSCPUP00000004236.1, ENSCPUT00000005121.1
    Conserved Domains (6) summary
    cd09327
    Location:26 → 77
    LIM1_abLIM; The first LIM domain of actin binding LIM (abLIM) proteins
    cd09328
    Location:82 → 137
    LIM2_abLIM; The second LIM domain on actin binding LIM (abLIM) proteins
    cd09329
    Location:155 → 206
    LIM3_abLIM; The third LIM domain of actin binding LIM (abLIM) proteins
    cd09330
    Location:214 → 269
    LIM4_abLIM; The fourth LIM domain of actin binding LIM (abLIM) proteins
    pfam02209
    Location:614 → 648
    VHP; Villin headpiece domain
    pfam16182
    Location:279 → 612
    AbLIM_anchor; Putative adherens-junction anchoring region of AbLIM

  8. XM_014966834.1 → XP_014822320.1  actin-binding LIM protein 2 isoform X1

    Related
    ENSCPUP00000004216.1, ENSCPUT00000005099.1
    Conserved Domains (6) summary
    cd09327
    Location:26 → 77
    LIM1_abLIM; The first LIM domain of actin binding LIM (abLIM) proteins
    cd09328
    Location:82 → 137
    LIM2_abLIM; The second LIM domain on actin binding LIM (abLIM) proteins
    cd09329
    Location:155 → 206
    LIM3_abLIM; The third LIM domain of actin binding LIM (abLIM) proteins
    cd09330
    Location:214 → 269
    LIM4_abLIM; The fourth LIM domain of actin binding LIM (abLIM) proteins
    pfam02209
    Location:633 → 667
    VHP; Villin headpiece domain
    pfam16182
    Location:279 → 631
    AbLIM_anchor; Putative adherens-junction anchoring region of AbLIM

  9. XM_014966836.1 → XP_014822322.1  actin-binding LIM protein 2 isoform X3

    Related
    ENSCPUP00000004228.1, ENSCPUT00000005111.1
    Conserved Domains (6) summary
    cd09327
    Location:26 → 77
    LIM1_abLIM; The first LIM domain of actin binding LIM (abLIM) proteins
    cd09328
    Location:82 → 137
    LIM2_abLIM; The second LIM domain on actin binding LIM (abLIM) proteins
    cd09329
    Location:155 → 206
    LIM3_abLIM; The third LIM domain of actin binding LIM (abLIM) proteins
    cd09330
    Location:214 → 269
    LIM4_abLIM; The fourth LIM domain of actin binding LIM (abLIM) proteins
    pfam02209
    Location:611 → 645
    VHP; Villin headpiece domain
    pfam16182
    Location:279 → 609
    AbLIM_anchor; Putative adherens-junction anchoring region of AbLIM

  10. XM_014966835.1 → XP_014822321.1  actin-binding LIM protein 2 isoform X2

    Conserved Domains (6) summary
    cd09327
    Location:26 → 77
    LIM1_abLIM; The first LIM domain of actin binding LIM (abLIM) proteins
    cd09328
    Location:82 → 137
    LIM2_abLIM; The second LIM domain on actin binding LIM (abLIM) proteins
    cd09329
    Location:155 → 206
    LIM3_abLIM; The third LIM domain of actin binding LIM (abLIM) proteins
    cd09330
    Location:214 → 269
    LIM4_abLIM; The fourth LIM domain of actin binding LIM (abLIM) proteins
    pfam02209
    Location:625 → 659
    VHP; Villin headpiece domain
    pfam16182
    Location:279 → 623
    AbLIM_anchor; Putative adherens-junction anchoring region of AbLIM
Nucleotide Protein
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