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ATRN attractin [ Calidris pugnax (ruff) ]

Gene ID: 106902945, updated on 3-Aug-2024

Summary

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Gene symbol
ATRN
Gene description
attractin
See related
Ensembl:ENSCPUG00000009947
Gene type
protein coding
RefSeq status
MODEL
Organism
Calidris pugnax
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Charadriiformes; Scolopacidae; Calidris
Annotation information
Annotation category: partial on reference assembly
Orthologs
human mouse all
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Genomic context

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See ATRN in Genome Data Viewer
Location:
chromosome: Un
Exon count:
28
Annotation release Status Assembly Chr Location
100 current ASM143184v1 (GCF_001431845.1) Unplaced Scaffold NW_015090793.1 (13223146..13340201)

NW_015090793.1Genomic Context describing neighboring genes Neighboring gene kyphoscoliosis peptidase-like Neighboring gene dynein axonemal assembly factor 9 Neighboring gene GDNF family receptor alpha 4 Neighboring gene ADAM metallopeptidase domain 33

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_015090793.1 Unplaced Scaffold Reference ASM143184v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
attractin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Calidris pugnax Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM143184v1

Genomic

  1. NW_015090793.1 Reference ASM143184v1

    Range
    13223146..13340201
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014966823.1 → XP_014822309.1  attractin

    Related
    ENSCPUP00000015009.1, ENSCPUT00000017820.1
    Conserved Domains (8) summary
    cd00041
    Location:3 → 111
    CUB; CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.
    cd00055
    Location:920 → 965
    EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
    sd00038
    Location:418 → 473
    Kelch; KELCH repeat [structural motif]
    pfam01344
    Location:204 → 248
    Kelch_1; Kelch motif
    pfam01437
    Location:790 → 841
    PSI; Plexin repeat
    pfam13854
    Location:256 → 292
    Kelch_5; Kelch motif
    cl02432
    Location:650 → 778
    CLECT; C-type lectin (CTL)/C-type lectin-like (CTLD) domain
    cl15693
    Location:837 → 864
    Sema; The Sema domain, a protein interacting module, of semaphorins and plexins
Nucleotide Protein
Heading Accession and Version

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