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PTCD3 pentatricopeptide repeat domain 3 [ Calidris pugnax (ruff) ]

Gene ID: 106902942, updated on 3-Aug-2024

Summary

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Gene symbol
PTCD3
Gene description
pentatricopeptide repeat domain 3
See related
Ensembl:ENSCPUG00000007644
Gene type
protein coding
RefSeq status
MODEL
Organism
Calidris pugnax
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Charadriiformes; Scolopacidae; Calidris
Orthologs
human mouse all
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Genomic context

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See PTCD3 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
25
Annotation release Status Assembly Chr Location
100 current ASM143184v1 (GCF_001431845.1) Unplaced Scaffold NW_015090793.1 (9143844..9163881)

NW_015090793.1Genomic Context describing neighboring genes Neighboring gene ST3 beta-galactoside alpha-2,3-sialyltransferase 5 Neighboring gene RNA polymerase I subunit A Neighboring gene inner membrane mitochondrial protein Neighboring gene mitochondrial ribosomal protein L35 Neighboring gene receptor accessory protein 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_015090793.1 Unplaced Scaffold Reference ASM143184v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables rRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ribosomal small subunit binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mitochondrial translation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
pentatricopeptide repeat domain-containing protein 3, mitochondrial

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Calidris pugnax Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM143184v1

Genomic

  1. NW_015090793.1 Reference ASM143184v1

    Range
    9143844..9163881
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014966821.1 → XP_014822307.1  pentatricopeptide repeat domain-containing protein 3, mitochondrial

    Related
    ENSCPUP00000010764.1, ENSCPUT00000012843.1
    Conserved Domains (2) summary
    PLN03218
    Location:249 → 518
    PLN03218; maturation of RBCL 1; Provisional
    sd00004
    Location:260 → 287
    PPR; PPR repeat [structural motif]

RNA

  1. XR_001414622.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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