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ZNF638 zinc finger protein 638 [ Calidris pugnax (ruff) ]

Gene ID: 106902938, updated on 3-Aug-2024

Summary

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Gene symbol
ZNF638
Gene description
zinc finger protein 638
See related
Ensembl:ENSCPUG00000010509
Gene type
protein coding
RefSeq status
MODEL
Organism
Calidris pugnax
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Charadriiformes; Scolopacidae; Calidris
Orthologs
human mouse all
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Genomic context

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See ZNF638 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
26
Annotation release Status Assembly Chr Location
100 current ASM143184v1 (GCF_001431845.1) Unplaced Scaffold NW_015090793.1 (15063999..15125333, complement)

NW_015090793.1Genomic Context describing neighboring genes Neighboring gene dysferlin Neighboring gene uncharacterized LOC106902927 Neighboring gene poly(A) binding protein interacting protein 2B Neighboring gene N-acetylglucosamine kinase

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_015090793.1 Unplaced Scaffold Reference ASM143184v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in RNA splicing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of RNA splicing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger protein 638

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Calidris pugnax Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM143184v1

Genomic

  1. NW_015090793.1 Reference ASM143184v1

    Range
    15063999..15125333 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014966811.1 → XP_014822297.1  zinc finger protein 638 isoform X2

    Related
    ENSCPUP00000015074.1, ENSCPUT00000017887.1
    Conserved Domains (4) summary
    smart00451
    Location:2045 → 2077
    ZnF_U1; U1-like zinc finger
    cd12436
    Location:1083 → 1157
    RRM1_2_MATR3_like; RNA recognition motif 1 and 2 in the matrin 3 family of nuclear proteins
    pfam08648
    Location:519 → 614
    DUF1777; Protein of unknown function (DUF1777)
    cl17169
    Location:734 → 809
    RRM_SF; RNA recognition motif (RRM) superfamily

  2. XM_014966812.1 → XP_014822298.1  zinc finger protein 638 isoform X3

    Conserved Domains (4) summary
    smart00451
    Location:1999 → 2031
    ZnF_U1; U1-like zinc finger
    cd12436
    Location:1036 → 1110
    RRM1_2_MATR3_like; RNA recognition motif 1 and 2 in the matrin 3 family of nuclear proteins
    pfam17069
    Location:502 → 748
    RSRP; Arginine/Serine-Rich protein 1
    cl17169
    Location:687 → 762
    RRM_SF; RNA recognition motif (RRM) superfamily

  3. XM_014966810.1 → XP_014822296.1  zinc finger protein 638 isoform X1

    Conserved Domains (4) summary
    smart00451
    Location:2046 → 2078
    ZnF_U1; U1-like zinc finger
    cd12436
    Location:1083 → 1157
    RRM1_2_MATR3_like; RNA recognition motif 1 and 2 in the matrin 3 family of nuclear proteins
    pfam08648
    Location:519 → 614
    DUF1777; Protein of unknown function (DUF1777)
    cl17169
    Location:734 → 809
    RRM_SF; RNA recognition motif (RRM) superfamily
Nucleotide Protein
Heading Accession and Version

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