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LOC106902937 charged multivesicular body protein 3 [ Calidris pugnax (ruff) ]

Gene ID: 106902937, updated on 3-Aug-2024

Summary

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Gene symbol
LOC106902937
Gene description
charged multivesicular body protein 3
See related
Ensembl:ENSCPUG00000008470 Ensembl:ENSCPUG00000008471
Gene type
protein coding
RefSeq status
MODEL
Organism
Calidris pugnax
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Charadriiformes; Scolopacidae; Calidris
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Genomic context

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See LOC106902937 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
12
Annotation release Status Assembly Chr Location
100 current ASM143184v1 (GCF_001431845.1) Unplaced Scaffold NW_015090793.1 (9309609..9348093, complement)

NW_015090793.1Genomic Context describing neighboring genes Neighboring gene receptor accessory protein 1 Neighboring gene lysine demethylase 3A Neighboring gene required for meiotic nuclear division 5 homolog A Neighboring gene CD8 subunit alpha

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_015090793.1 Unplaced Scaffold Reference ASM143184v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ubiquitin-protein transferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in endosome transport via multivesicular body sorting pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in late endosome to vacuole transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein ubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of ESCRT III complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in multivesicular body IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
E3 ubiquitin-protein ligase RNF103; charged multivesicular body protein 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Calidris pugnax Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM143184v1

Genomic

  1. NW_015090793.1 Reference ASM143184v1

    Range
    9309609..9348093 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014966809.1 → XP_014822295.1  charged multivesicular body protein 3 isoform X3

    Conserved Domains (1) summary
    pfam03357
    Location:125 → 294
    Snf7; Snf7

  2. XM_014966808.1 → XP_014822294.1  charged multivesicular body protein 3 isoform X2

    Related
    ENSCPUP00000011967.1, ENSCPUT00000014231.1
    Conserved Domains (1) summary
    pfam03357
    Location:18 → 187
    Snf7; Snf7

  3. XM_014966806.1 → XP_014822292.1  E3 ubiquitin-protein ligase RNF103 isoform X1

    Related
    ENSCPUP00000011970.1, ENSCPUT00000014234.1
    Conserved Domains (2) summary
    cd00162
    Location:621 → 664
    RING; RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in ...
    pfam12678
    Location:609 → 664
    zf-rbx1; RING-H2 zinc finger

  4. XM_014966807.1 → XP_014822293.1  E3 ubiquitin-protein ligase RNF103 isoform X1

    Related
    ENSCPUP00000011971.1, ENSCPUT00000014235.1
    Conserved Domains (2) summary
    cd00162
    Location:621 → 664
    RING; RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in ...
    pfam12678
    Location:609 → 664
    zf-rbx1; RING-H2 zinc finger
Nucleotide Protein
Heading Accession and Version

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