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KDM3A lysine demethylase 3A [ Calidris pugnax (ruff) ]

Gene ID: 106902936, updated on 3-Aug-2024

Summary

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Gene symbol
KDM3A
Gene description
lysine demethylase 3A
See related
Ensembl:ENSCPUG00000008469
Gene type
protein coding
RefSeq status
MODEL
Organism
Calidris pugnax
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Charadriiformes; Scolopacidae; Calidris
Orthologs
human mouse all
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Genomic context

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See KDM3A in Genome Data Viewer
Location:
chromosome: Un
Exon count:
28
Annotation release Status Assembly Chr Location
100 current ASM143184v1 (GCF_001431845.1) Unplaced Scaffold NW_015090793.1 (9271964..9307367)

NW_015090793.1Genomic Context describing neighboring genes Neighboring gene mitochondrial ribosomal protein L35 Neighboring gene receptor accessory protein 1 Neighboring gene charged multivesicular body protein 3 Neighboring gene required for meiotic nuclear division 5 homolog A

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_015090793.1 Unplaced Scaffold Reference ASM143184v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables chromatin DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables histone H3K9 demethylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription coregulator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of chromatin IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of histone deacetylase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
lysine-specific demethylase 3A

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Calidris pugnax Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM143184v1

Genomic

  1. NW_015090793.1 Reference ASM143184v1

    Range
    9271964..9307367
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014966805.1 → XP_014822291.1  lysine-specific demethylase 3A isoform X2

    Related
    ENSCPUP00000011962.1, ENSCPUT00000014226.1
    Conserved Domains (2) summary
    smart00558
    Location:1086 → 1140
    JmjC; A domain family that is part of the cupin metalloenzyme superfamily
    cl21464
    Location:1157 → 1270
    cupin_like; Conserved domain found in cupin and related proteins

  2. XM_014966803.1 → XP_014822289.1  lysine-specific demethylase 3A isoform X1

    Related
    ENSCPUP00000011963.1, ENSCPUT00000014227.1
    Conserved Domains (2) summary
    smart00558
    Location:964 → 1018
    JmjC; A domain family that is part of the cupin metalloenzyme superfamily
    cl21464
    Location:1035 → 1148
    cupin_like; Conserved domain found in cupin and related proteins
Nucleotide Protein
Heading Accession and Version

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