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LETM1 leucine zipper and EF-hand containing transmembrane protein 1 [ Calidris pugnax (ruff) ]

Gene ID: 106902932, updated on 3-Aug-2024

Summary

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Gene symbol
LETM1
Gene description
leucine zipper and EF-hand containing transmembrane protein 1
See related
Ensembl:ENSCPUG00000007587
Gene type
protein coding
RefSeq status
MODEL
Organism
Calidris pugnax
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Charadriiformes; Scolopacidae; Calidris
Orthologs
human mouse all
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Genomic context

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See LETM1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
14
Annotation release Status Assembly Chr Location
100 current ASM143184v1 (GCF_001431845.1) Unplaced Scaffold NW_015090793.1 (6761782..6790316)

NW_015090793.1Genomic Context describing neighboring genes Neighboring gene multiple epidermal growth factor-like domains protein 9 Neighboring gene uncharacterized LOC106902933 Neighboring gene nuclear receptor binding SET domain protein 2 Neighboring gene fibroblast growth factor receptor 3 Neighboring gene transforming acidic coiled-coil containing protein 3

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_015090793.1 Unplaced Scaffold Reference ASM143184v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ribosome binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in intracellular monoatomic cation homeostasis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrial inner membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LETM1 and EF-hand domain-containing protein 1, mitochondrial

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Calidris pugnax Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM143184v1

Genomic

  1. NW_015090793.1 Reference ASM143184v1

    Range
    6761782..6790316
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014966773.1 → XP_014822259.1  LETM1 and EF-hand domain-containing protein 1, mitochondrial isoform X1

    Conserved Domains (1) summary
    pfam07766
    Location:155 → 410
    LETM1; LETM1-like protein

  2. XM_014966775.1 → XP_014822261.1  LETM1 and EF-hand domain-containing protein 1, mitochondrial isoform X2

    Related
    ENSCPUP00000010676.1, ENSCPUT00000012745.1
    Conserved Domains (2) summary
    pfam07766
    Location:155 → 410
    LETM1; LETM1-like protein
    cl00591
    Location:594 → 698
    FlaG; FlaG protein
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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