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ERCC4 ERCC excision repair 4, endonuclease catalytic subunit [ Calidris pugnax (ruff) ]

Gene ID: 106884878, updated on 3-Aug-2024

Summary

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Gene symbol
ERCC4
Gene description
ERCC excision repair 4, endonuclease catalytic subunit
See related
Ensembl:ENSCPUG00000016845
Gene type
protein coding
RefSeq status
MODEL
Organism
Calidris pugnax
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Charadriiformes; Scolopacidae; Calidris
Orthologs
human mouse all
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Genomic context

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See ERCC4 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
12
Annotation release Status Assembly Chr Location
100 current ASM143184v1 (GCF_001431845.1) Unplaced Scaffold NW_015090794.1 (7692993..7708711)

NW_015090794.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC106884850 Neighboring gene calcineurin like phosphoesterase domain containing 1 Neighboring gene shisa family member 9 Neighboring gene uncharacterized LOC106884879 Neighboring gene uncharacterized LOC106884793 Neighboring gene myocardin related transcription factor B Neighboring gene uncharacterized protein C10orf95-like Neighboring gene transfer RNA threonine (anticodon CGU)

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_015090794.1 Unplaced Scaffold Reference ASM143184v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables damaged DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables single-stranded DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables single-stranded DNA endodeoxyribonuclease activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in double-strand break repair via homologous recombination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nucleotide-excision repair involved in interstrand cross-link repair IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in resolution of meiotic recombination intermediates IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of nucleotide-excision repair factor 1 complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
DNA repair endonuclease XPF

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Calidris pugnax Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM143184v1

Genomic

  1. NW_015090794.1 Reference ASM143184v1

    Range
    7692993..7708711
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014936615.1 → XP_014792101.1  DNA repair endonuclease XPF isoform X1

    Related
    ENSCPUP00000024878.1, ENSCPUT00000029312.1
    Conserved Domains (2) summary
    TIGR00596
    Location:86 → 889
    rad1; DNA repair protein (rad1)
    pfam02732
    Location:673 → 803
    ERCC4; ERCC4 domain

  2. XM_014936616.1 → XP_014792102.1  DNA repair endonuclease XPF isoform X2

    Conserved Domains (2) summary
    TIGR00596
    Location:1 → 719
    rad1; DNA repair protein (rad1)
    pfam02732
    Location:503 → 633
    ERCC4; ERCC4 domain
Nucleotide Protein
Heading Accession and Version

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