U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC106867773 zeta-sarcoglycan [ Octopus bimaculoides (California two-spot octopus) ]

Gene ID: 106867773, updated on 23-Nov-2023

Summary

Go to the top of the page Help
Gene symbol
LOC106867773
Gene description
zeta-sarcoglycan
Locus tag
OCBIM_22001999mg
See related
EnsemblRapid:LOC106867773
Gene type
protein coding
RefSeq status
MODEL
Organism
Octopus bimaculoides
Lineage
Eukaryota; Metazoa; Spiralia; Lophotrochozoa; Mollusca; Cephalopoda; Coleoidea; Octopodiformes; Octopoda; Incirrata; Octopodidae; Octopus
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC106867773 in Genome Data Viewer
Location:
chromosome: 13
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2023_01 current ASM119413v2 (GCF_001194135.2) 13 NC_068993.1 (63451308..63548529, complement)
100 previous assembly Octopus_bimaculoides_v2_0 (GCF_001194135.1) Unplaced Scaffold NW_014657888.1 (1260449..1344525)

Chromosome 13 - NC_068993.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC106867775 Neighboring gene nudC domain-containing protein 2 Neighboring gene kelch-like protein 8 Neighboring gene uncharacterized LOC128249312 Neighboring gene tumor suppressor candidate 3 Neighboring gene uncharacterized LOC128249313

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cardiac muscle tissue development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in heart contraction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of sarcoglycan complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in sarcolemma IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
zeta-sarcoglycan

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_001194135.2-RS_

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM119413v2 Primary Assembly

Genomic

  1. NC_068993.1 Reference ASM119413v2 Primary Assembly

    Range
    63451308..63548529 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_052972559.1 → XP_052828519.1  zeta-sarcoglycan

    UniProtKB/TrEMBL
    A0A0L8HYM7
    Related
    XP_052828519.1, XM_052972559.1
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases