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LOC106866561 mitochondrial carnitine/acylcarnitine carrier-like protein [ Brachypodium distachyon (stiff brome) ]

Gene ID: 106866561, updated on 9-Nov-2023

Summary

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Gene symbol
LOC106866561
Gene description
mitochondrial carnitine/acylcarnitine carrier-like protein
Locus tag
BRADI_3g34077v3
Gene type
protein coding
RefSeq status
MODEL
Organism
Brachypodium distachyon
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Pooideae; Stipodae; Brachypodieae; Brachypodium
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Genomic context

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See LOC106866561 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
2
Annotation release Status Assembly Chr Location
103 current Brachypodium_distachyon_v3.0 (GCF_000005505.3) 3 NC_016133.3 (36260579..36262822, complement)
102 previous assembly Brachypodium_distachyon_v2.0 (GCF_000005505.2) 3 NC_016133.2 (36562822..36565003, complement)

Chromosome 3 - NC_016133.3Genomic Context describing neighboring genes Neighboring gene abscisic acid receptor PYR1 Neighboring gene transfer RNA methionine (anticodon CAU) Neighboring gene mitochondrial carnitine/acylcarnitine carrier-like protein Neighboring gene 60S ribosomal export protein NMD3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Large-scale collection and analysis of full-length cDNAs from Brachypodium distachyon and integration with Pooideae sequence resources. Mochida K, et al. PLoS One, 2013. PMID 24130698, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables L-ornithine transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mitochondrial L-ornithine transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
mitochondrial carnitine/acylcarnitine carrier-like protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Brachypodium distachyon Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Brachypodium_distachyon_v3.0 Primary Assembly

Genomic

  1. NC_016133.3 Reference Brachypodium_distachyon_v3.0 Primary Assembly

    Range
    36260579..36262822 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014901456.2 → XP_014756942.2  mitochondrial carnitine/acylcarnitine carrier-like protein isoform X2

    UniProtKB/TrEMBL
    A0A0Q3FE86
    Conserved Domains (1) summary
    pfam00153
    Location:313 → 381
    Mito_carr; Mitochondrial carrier protein

  2. XM_024461085.1 → XP_024316853.1  mitochondrial carnitine/acylcarnitine carrier-like protein isoform X1

    Conserved Domains (1) summary
    pfam00153
    Location:324 → 392
    Mito_carr; Mitochondrial carrier protein
Nucleotide Protein Strain
Heading Accession and Version

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