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DYSF dysferlin [ Sturnus vulgaris (Common starling) ]

Gene ID: 106861236, updated on 3-Aug-2024

Summary

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Gene symbol
DYSF
Gene description
dysferlin
Gene type
protein coding
RefSeq status
MODEL
Organism
Sturnus vulgaris
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Sturnidae; Sturnus
Orthologs
human mouse all
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Genomic context

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See DYSF in Genome Data Viewer
Location:
chromosome: Un
Exon count:
54
Annotation release Status Assembly Chr Location
100 current Sturnus_vulgaris-1.0 (GCF_001447265.1) Unplaced Scaffold NW_014650749.1 (899940..974607, complement)

NW_014650749.1Genomic Context describing neighboring genes Neighboring gene exocyst complex component 6B-like Neighboring gene cytochrome P450 26B1 Neighboring gene transcription factor COE4-like Neighboring gene sperm flagellar 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_014650749.1 Unplaced Scaffold Reference Sturnus_vulgaris-1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in membrane fusion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in plasma membrane organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: dysferlin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sturnus vulgaris Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sturnus_vulgaris-1.0

Genomic

  1. NW_014650749.1 Reference Sturnus_vulgaris-1.0

    Range
    899940..974607 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014889496.1 → XP_014744982.1  LOW QUALITY PROTEIN: dysferlin

    Conserved Domains (11) summary
    cd04011
    Location:213 → 322
    C2B_Ferlin; C2 domain second repeat in Ferlin
    cd04017
    Location:1146 → 1274
    C2D_Ferlin; C2 domain fourth repeat in Ferlin
    cd04018
    Location:377 → 550
    C2C_Ferlin; C2 domain third repeat in Ferlin
    cd04037
    Location:1608 → 1711
    C2E_Ferlin; C2 domain fifth repeat in Ferlin
    cd08373
    Location:20 → 128
    C2A_Ferlin; C2 domain first repeat in Ferlin
    cd08374
    Location:1822 → 1953
    C2F_Ferlin; C2 domain sixth repeat in Ferlin
    smart00693
    Location:936 → 992
    DysFN; Dysferlin domain, N-terminal region
    pfam08150
    Location:777 → 849
    FerB; FerB (NUC096) domain
    pfam08151
    Location:320 → 370
    FerI; FerI (NUC094) domain
    pfam08165
    Location:688 → 745
    FerA; FerA (NUC095) domain
    pfam16165
    Location:1966 → 2053
    Ferlin_C; Ferlin C-terminus
Nucleotide Protein
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