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TRAF2 TNF receptor associated factor 2 [ Sturnus vulgaris (Common starling) ]

Gene ID: 106855986, updated on 3-Aug-2024

Summary

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Gene symbol
TRAF2
Gene description
TNF receptor associated factor 2
Gene type
protein coding
RefSeq status
MODEL
Organism
Sturnus vulgaris
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Sturnidae; Sturnus
Orthologs
human mouse all
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Genomic context

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See TRAF2 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
10
Annotation release Status Assembly Chr Location
100 current Sturnus_vulgaris-1.0 (GCF_001447265.1) Unplaced Scaffold NW_014650589.1 (2275180..2294921)

NW_014650589.1Genomic Context describing neighboring genes Neighboring gene MAM domain containing 4 Neighboring gene endothelial differentiation related factor 1 Neighboring gene F-box and WD repeat domain containing 5 Neighboring gene complement C8 gamma chain

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_014650589.1 Unplaced Scaffold Reference Sturnus_vulgaris-1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables tumor necrosis factor receptor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ubiquitin protein ligase binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ubiquitin-protein transferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of JNK cascade IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of NF-kappaB transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of canonical NF-kappaB signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein K63-linked ubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of apoptotic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in tumor necrosis factor-mediated signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasmic side of plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of plasma membrane signaling receptor complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
TNF receptor-associated factor 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sturnus vulgaris Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sturnus_vulgaris-1.0

Genomic

  1. NW_014650589.1 Reference Sturnus_vulgaris-1.0

    Range
    2275180..2294921
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014881043.1 → XP_014736529.1  TNF receptor-associated factor 2

    Conserved Domains (4) summary
    pfam00097
    Location:34 → 72
    zf-C3HC4; Zinc finger, C3HC4 type (RING finger)
    pfam02176
    Location:124 → 180
    zf-TRAF; TRAF-type zinc finger
    pfam16673
    Location:238 → 300
    TRAF_BIRC3_bd; TNF receptor-associated factor BIRC3 binding domain
    cl02446
    Location:305 → 468
    MATH; MATH (meprin and TRAF-C homology) domain; an independent folding unit with an eight-stranded beta-sandwich structure found in meprins, TRAFs and other proteins. Meprins comprise a class of extracellular metalloproteases which are anchored to the membrane ...
Nucleotide Protein
Heading Accession and Version

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