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SGCD sarcoglycan delta [ Sturnus vulgaris (Common starling) ]

Gene ID: 106852977, updated on 3-Aug-2024

Summary

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Gene symbol
SGCD
Gene description
sarcoglycan delta
Gene type
protein coding
RefSeq status
MODEL
Organism
Sturnus vulgaris
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Sturnidae; Sturnus
Orthologs
human mouse all
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Genomic context

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See SGCD in Genome Data Viewer
Location:
chromosome: Un
Exon count:
13
Annotation release Status Assembly Chr Location
100 current Sturnus_vulgaris-1.0 (GCF_001447265.1) Unplaced Scaffold NW_014650534.1 (2698659..3006535, complement)

NW_014650534.1Genomic Context describing neighboring genes Neighboring gene hepatitis A virus cellular receptor 1 homolog Neighboring gene mediator complex subunit 7 Neighboring gene mitochondrial ribosomal protein L22 Neighboring gene gem nuclear organelle associated protein 5

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_014650534.1 Unplaced Scaffold Reference Sturnus_vulgaris-1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cardiac muscle tissue development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in heart contraction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of sarcoglycan complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in sarcolemma IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
delta-sarcoglycan

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sturnus vulgaris Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sturnus_vulgaris-1.0

Genomic

  1. NW_014650534.1 Reference Sturnus_vulgaris-1.0

    Range
    2698659..3006535 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014875971.1 → XP_014731457.1  delta-sarcoglycan isoform X1

    Conserved Domains (1) summary
    pfam04790
    Location:22 → 276
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  2. XM_014875970.1 → XP_014731456.1  delta-sarcoglycan isoform X1

    Conserved Domains (1) summary
    pfam04790
    Location:22 → 276
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  3. XM_014875975.1 → XP_014731461.1  delta-sarcoglycan isoform X2

    Conserved Domains (1) summary
    pfam04790
    Location:20 → 233
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  4. XM_014875969.1 → XP_014731455.1  delta-sarcoglycan isoform X1

    Conserved Domains (1) summary
    pfam04790
    Location:22 → 276
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  5. XM_014875974.1 → XP_014731460.1  delta-sarcoglycan isoform X1

    Conserved Domains (1) summary
    pfam04790
    Location:22 → 276
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  6. XM_014875972.1 → XP_014731458.1  delta-sarcoglycan isoform X1

    Conserved Domains (1) summary
    pfam04790
    Location:22 → 276
    Sarcoglycan_1; Sarcoglycan complex subunit protein
Nucleotide Protein
Heading Accession and Version

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