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ARIH2 ariadne RBR E3 ubiquitin protein ligase 2 [ Sturnus vulgaris (Common starling) ]

Gene ID: 106851015, updated on 3-Aug-2024

Summary

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Gene symbol
ARIH2
Gene description
ariadne RBR E3 ubiquitin protein ligase 2
Gene type
protein coding
RefSeq status
MODEL
Organism
Sturnus vulgaris
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Sturnidae; Sturnus
Orthologs
human mouse all
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Genomic context

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See ARIH2 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
16
Annotation release Status Assembly Chr Location
100 current Sturnus_vulgaris-1.0 (GCF_001447265.1) Unplaced Scaffold NW_014650463.1 (2476820..2511775, complement)

NW_014650463.1Genomic Context describing neighboring genes Neighboring gene secreted frizzled-related protein 5-like Neighboring gene WD repeat domain 6 Neighboring gene prolyl 4-hydroxylase, transmembrane Neighboring gene solute carrier family 25 member 20 Neighboring gene protein kinase cAMP-dependent type II regulatory subunit alpha

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_014650463.1 Unplaced Scaffold Reference Sturnus_vulgaris-1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ubiquitin conjugating enzyme binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ubiquitin protein ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of proteasomal ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein polyubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of ubiquitin ligase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
E3 ubiquitin-protein ligase ARIH2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sturnus vulgaris Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sturnus_vulgaris-1.0

Genomic

  1. NW_014650463.1 Reference Sturnus_vulgaris-1.0

    Range
    2476820..2511775 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014872712.1 → XP_014728198.1  E3 ubiquitin-protein ligase ARIH2

    Conserved Domains (3) summary
    smart00647
    Location:205 → 267
    IBR; In Between Ring fingers
    cd16773
    Location:134 → 187
    RING-HC_RBR_TRIAD1; RING finger, HC subclass, found in two RING fingers and DRIL [double RING finger linked] 1 (TRIAD1)
    pfam01485
    Location:295 → 327
    IBR; IBR domain, a half RING-finger domain

  2. XM_014872721.1 → XP_014728207.1  E3 ubiquitin-protein ligase ARIH2

    Conserved Domains (3) summary
    smart00647
    Location:205 → 267
    IBR; In Between Ring fingers
    cd16773
    Location:134 → 187
    RING-HC_RBR_TRIAD1; RING finger, HC subclass, found in two RING fingers and DRIL [double RING finger linked] 1 (TRIAD1)
    pfam01485
    Location:295 → 327
    IBR; IBR domain, a half RING-finger domain
Nucleotide Protein
Heading Accession and Version

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