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B3GALT6 beta-1,3-galactosyltransferase 6 [ Equus asinus (ass) ]

Gene ID: 106845197, updated on 13-Mar-2024

Summary

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Gene symbol
B3GALT6
Gene description
beta-1,3-galactosyltransferase 6
Gene type
protein coding
RefSeq status
MODEL
Organism
Equus asinus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
Orthologs
human mouse all
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Genomic context

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See B3GALT6 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
2
Annotation release Status Assembly Chr Location
101 current ASM1607732v2 (GCF_016077325.2) 5 NC_052181.1 (1792682..1797062)
100 previous assembly ASM130575v1 (GCF_001305755.1) Unplaced Scaffold NW_014638278.1 (1090526..1092295, complement)

Chromosome 5 - NC_052181.1Genomic Context describing neighboring genes Neighboring gene TNF receptor superfamily member 4 Neighboring gene stromal cell derived factor 4 Neighboring gene C1q and TNF related 12 Neighboring gene ubiquitin conjugating enzyme E2 J2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables UDP-galactosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in glycosaminoglycan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: beta-1,3-galactosyltransferase 6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Equus asinus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1607732v2

Genomic

  1. NC_052181.1 Reference ASM1607732v2

    Range
    1792682..1797062
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014863088.2 → XP_014718574.2  LOW QUALITY PROTEIN: beta-1,3-galactosyltransferase 6

    UniProtKB/TrEMBL
    A0A8C4M939
    Conserved Domains (1) summary
    cl21608
    Location:71 → 262
    Galactosyl_T; Galactosyltransferase
Nucleotide Protein
Heading Accession and Version

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