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TMEM199 transmembrane protein 199 [ Equus asinus (ass) ]

Gene ID: 106844591, updated on 13-Mar-2024

Summary

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Gene symbol
TMEM199
Gene description
transmembrane protein 199
See related
Ensembl:ENSEASG00005009969
Gene type
protein coding
RefSeq status
MODEL
Organism
Equus asinus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
Orthologs
human mouse all
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Genomic context

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See TMEM199 in Genome Data Viewer
Location:
chromosome: 13
Exon count:
6
Annotation release Status Assembly Chr Location
101 current ASM1607732v2 (GCF_016077325.2) 13 NC_052189.1 (22485996..22490354, complement)
100 previous assembly ASM130575v1 (GCF_001305755.1) Unplaced Scaffold NW_014638258.1 (1383620..1387952, complement)

Chromosome 13 - NC_052189.1Genomic Context describing neighboring genes Neighboring gene vitronectin Neighboring gene SEBOX homeobox Neighboring gene DNA polymerase delta interacting protein 2 Neighboring gene TNF alpha induced protein 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in vacuolar proton-transporting V-type ATPase complex assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endomembrane system IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transmembrane protein 199

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Equus asinus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1607732v2

Genomic

  1. NC_052189.1 Reference ASM1607732v2

    Range
    22485996..22490354 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_044744925.1 → XP_044600860.1  transmembrane protein 199 isoform X2

    UniProtKB/TrEMBL
    A0A8C4LNZ1, A0A9L0J770
    Related
    ENSEASP00005049014.1, ENSEAST00005039878.1

  2. XM_014862113.2 → XP_014717599.1  transmembrane protein 199 isoform X1

    UniProtKB/TrEMBL
    A0A8C4LNZ1, A0A9L0J9H7
    Related
    ENSEASP00005046662.1, ENSEAST00005062041.1
    Conserved Domains (1) summary
    pfam11712
    Location:78 → 202
    Vma12; Endoplasmic reticulum-based factor for assembly of V-ATPase
Nucleotide Protein
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