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GPD2 glycerol-3-phosphate dehydrogenase 2 [ Equus asinus (ass) ]

Gene ID: 106841969, updated on 11-Apr-2024

Summary

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Gene symbol
GPD2
Gene description
glycerol-3-phosphate dehydrogenase 2
See related
Ensembl:ENSEASG00005023309
Gene type
protein coding
RefSeq status
MODEL
Organism
Equus asinus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
Orthologs
human mouse all
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Genomic context

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See GPD2 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
20
Annotation release Status Assembly Chr Location
101 current ASM1607732v2 (GCF_016077325.2) 4 NC_052180.1 (54263361..54402444, complement)
100 previous assembly ASM130575v1 (GCF_001305755.1) Unplaced Scaffold NW_014638168.1 (889658..1025507, complement)

Chromosome 4 - NC_052180.1Genomic Context describing neighboring genes Neighboring gene polypeptide N-acetylgalactosaminyltransferase 5 Neighboring gene U6 spliceosomal RNA Neighboring gene uncharacterized LOC123285017 Neighboring gene transfer RNA glycine (anticodon GCC) Neighboring gene transfer RNA alanine (anticodon CGC)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables glycerol-3-phosphate dehydrogenase (quinone) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in glycerol-3-phosphate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of glycerol-3-phosphate dehydrogenase (FAD) complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
glycerol-3-phosphate dehydrogenase, mitochondrial

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Equus asinus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1607732v2

Genomic

  1. NC_052180.1 Reference ASM1607732v2

    Range
    54263361..54402444 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_044768891.1 → XP_044624826.1  glycerol-3-phosphate dehydrogenase, mitochondrial isoform X1

    UniProtKB/TrEMBL
    A0A8C4N0W7
    Conserved Domains (2) summary
    cd00051
    Location:627 → 689
    EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...
    cl40741
    Location:1 → 599
    DAO; FAD dependent oxidoreductase

  2. XM_014858273.2 → XP_014713759.1  glycerol-3-phosphate dehydrogenase, mitochondrial isoform X1

    UniProtKB/TrEMBL
    A0A8C4N0W7
    Conserved Domains (2) summary
    cd00051
    Location:627 → 689
    EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...
    cl40741
    Location:1 → 599
    DAO; FAD dependent oxidoreductase

  3. XM_014858275.2 → XP_014713761.1  glycerol-3-phosphate dehydrogenase, mitochondrial isoform X2

    UniProtKB/TrEMBL
    A0A8C4N0W7, A0A9L0I929
    Related
    ENSEASP00005037122.1, ENSEAST00005068855.1
    Conserved Domains (4) summary
    PLN02464
    Location:1 → 599
    PLN02464; glycerol-3-phosphate dehydrogenase
    cd00051
    Location:627 → 689
    EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...
    pfam13499
    Location:629 → 688
    EF-hand_7; EF-hand domain pair
    pfam16901
    Location:462 → 585
    DAO_C; C-terminal domain of alpha-glycerophosphate oxidase

  4. XM_014858272.2 → XP_014713758.1  glycerol-3-phosphate dehydrogenase, mitochondrial isoform X1

    UniProtKB/TrEMBL
    A0A8C4N0W7
    Conserved Domains (2) summary
    cd00051
    Location:627 → 689
    EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...
    cl40741
    Location:1 → 599
    DAO; FAD dependent oxidoreductase

  5. XM_044768892.1 → XP_044624827.1  glycerol-3-phosphate dehydrogenase, mitochondrial isoform X3

    UniProtKB/TrEMBL
    A0A8C4N0W7
    Conserved Domains (2) summary
    cd00051
    Location:501 → 563
    EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...
    cl40741
    Location:2 → 473
    DAO; FAD dependent oxidoreductase

  6. XM_014858274.2 → XP_014713760.1  glycerol-3-phosphate dehydrogenase, mitochondrial isoform X1

    UniProtKB/TrEMBL
    A0A8C4N0W7
    Conserved Domains (2) summary
    cd00051
    Location:627 → 689
    EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...
    cl40741
    Location:1 → 599
    DAO; FAD dependent oxidoreductase
Nucleotide Protein
Heading Accession and Version

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