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VCAN versican [ Equus asinus (ass) ]

Gene ID: 106841200, updated on 13-Mar-2024

Summary

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Gene symbol
VCAN
Gene description
versican
See related
Ensembl:ENSEASG00005004200
Gene type
protein coding
RefSeq status
MODEL
Organism
Equus asinus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
Orthologs
human mouse all
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Genomic context

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See VCAN in Genome Data Viewer
Location:
chromosome: 9
Exon count:
15
Annotation release Status Assembly Chr Location
101 current ASM1607732v2 (GCF_016077325.2) 9 NC_052185.1 (53585179..53690462, complement)
100 previous assembly ASM130575v1 (GCF_001305755.1) Unplaced Scaffold NW_014638147.1 (4109140..4214838)

Chromosome 9 - NC_052185.1Genomic Context describing neighboring genes Neighboring gene EGF like repeats and discoidin domains 3 Neighboring gene uncharacterized LOC123289021 Neighboring gene hyaluronan and proteoglycan link protein 1 Neighboring gene uncharacterized LOC123289022 Neighboring gene X-ray repair cross complementing 4 Neighboring gene uncharacterized LOC106841199 Neighboring gene small nucleolar RNA U109 Neighboring gene transmembrane protein 167A

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables hyaluronic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
versican core protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Equus asinus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1607732v2

Genomic

  1. NC_052185.1 Reference ASM1607732v2

    Range
    53585179..53690462 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014857043.2 → XP_014712529.1  versican core protein isoform X2

    UniProtKB/TrEMBL
    A0A8C4L965
    Related
    ENSEASP00005006131.2, ENSEAST00005006713.2
    Conserved Domains (7) summary
    cd05901
    Location:36 → 152
    Ig_Versican; Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican
    cd00033
    Location:2301 → 2357
    CCP; Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system
    cd03588
    Location:2174 → 2297
    CLECT_CSPGs; C-type lectin-like domain (CTLD) of the type found in chondroitin sulfate proteoglycan core proteins
    smart00410
    Location:29 → 148
    IG_like; Immunoglobulin like
    cd00054
    Location:2132 → 2168
    EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
    cd03517
    Location:151 → 245
    Link_domain_CSPGs_modules_1_3; Link_domain_CSPGs_modules_1_3; this extracellular link domain is found in the first and third link modules of the chondroitin sulfate proteoglycan core protein (CSPG) aggrecan. In addition, it is found in the first link module of three other CSPGs: ...
    cd03520
    Location:252 → 347
    Link_domain_CSPGs_modules_2_4; Link_domain_CSPGs_modules_2_4; this link domain is found in the second and fourth link modules of the chondroitin sulfate proteoglycan core protein (CSPG) aggrecan and, in the second link module of three other CSPGs: versican, neurocan, and brevican. The ...

  2. XM_014857042.2 → XP_014712528.1  versican core protein isoform X1

    UniProtKB/TrEMBL
    A0A8C4L5V9
    Related
    ENSEASP00005006124.2, ENSEAST00005006706.2
    Conserved Domains (7) summary
    cd05901
    Location:36 → 152
    Ig_Versican; Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican
    cd00033
    Location:3298 → 3354
    CCP; Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system
    cd03588
    Location:3171 → 3294
    CLECT_CSPGs; C-type lectin-like domain (CTLD) of the type found in chondroitin sulfate proteoglycan core proteins
    smart00410
    Location:29 → 148
    IG_like; Immunoglobulin like
    cd00054
    Location:3129 → 3165
    EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
    cd03517
    Location:151 → 245
    Link_domain_CSPGs_modules_1_3; Link_domain_CSPGs_modules_1_3; this extracellular link domain is found in the first and third link modules of the chondroitin sulfate proteoglycan core protein (CSPG) aggrecan. In addition, it is found in the first link module of three other CSPGs: ...
    cd03520
    Location:252 → 347
    Link_domain_CSPGs_modules_2_4; Link_domain_CSPGs_modules_2_4; this link domain is found in the second and fourth link modules of the chondroitin sulfate proteoglycan core protein (CSPG) aggrecan and, in the second link module of three other CSPGs: versican, neurocan, and brevican. The ...

  3. XM_044777886.1 → XP_044633821.1  versican core protein isoform X3

    UniProtKB/TrEMBL
    A0A8C4LB55
    Related
    ENSEASP00005006139.2, ENSEAST00005006722.2
    Conserved Domains (7) summary
    cd00033
    Location:556 → 612
    CCP; Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system
    smart00406
    Location:40 → 133
    IGv; Immunoglobulin V-Type
    cd00054
    Location:387 → 423
    EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
    cd03517
    Location:151 → 245
    Link_domain_CSPGs_modules_1_3; this extracellular link domain is found in the first and third link modules of the chondroitin sulfate proteoglycan core protein (CSPG) aggrecan. In addition, it is found in the first link module of three other CSPGs: versican, neurocan, and brevican. ...
    cd03520
    Location:252 → 347
    Link_domain_CSPGs_modules_2_4; this link domain is found in the second and fourth link modules of the chondroitin sulfate proteoglycan core protein (CSPG) aggrecan and, in the second link module of three other CSPGs: versican, neurocan, and brevican. The link domain is a hyaluronan ...
    cd00096
    Location:51 → 54
    Ig; Ig strand B [structural motif]
    cl02432
    Location:429 → 552
    CLECT; C-type lectin (CTL)/C-type lectin-like (CTLD) domain
Nucleotide Protein
Heading Accession and Version

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