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NCAM1 neural cell adhesion molecule 1 [ Equus asinus (ass) ]

Gene ID: 106840225, updated on 13-Mar-2024

Summary

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Gene symbol
NCAM1
Gene description
neural cell adhesion molecule 1
See related
Ensembl:ENSEASG00005006756
Gene type
protein coding
RefSeq status
MODEL
Organism
Equus asinus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 20
Exon count:
25
Annotation release Status Assembly Chr Location
101 current ASM1607732v2 (GCF_016077325.2) 20 NC_052196.1 (37758521..38060550, complement)
100 previous assembly ASM130575v1 (GCF_001305755.1) Unplaced Scaffold NW_014638125.1 (1678576..1982688)

Chromosome 20 - NC_052196.1Genomic Context describing neighboring genes Neighboring gene ankyrin repeat and kinase domain containing 1 Neighboring gene tetratricopeptide repeat domain 12 Neighboring gene uncharacterized LOC123279067 Neighboring gene uncharacterized LOC123279123

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cell-cell adhesion mediator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in axon guidance IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in dendrite self-avoidance IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in homophilic cell adhesion via plasma membrane adhesion molecules IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in axon IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
neural cell adhesion molecule 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Equus asinus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1607732v2

Genomic

  1. NC_052196.1 Reference ASM1607732v2

    Range
    37758521..38060550 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_044752317.1 → XP_044608252.1  neural cell adhesion molecule 1 isoform X12

    UniProtKB/TrEMBL
    A0A8C4LGF4
    Conserved Domains (4) summary
    cd05730
    Location:211 → 306
    IgI_3_NCAM-1; Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule 1 (NCAM-1); member of the I-set of IgSF domains
    cd05869
    Location:305 → 401
    IgI_NCAM-1; Immunoglobulin (Ig)-like I-set domain of Neural Cell Adhesion Molecule 1 (NCAM-1)
    smart00409
    Location:26 → 112
    IG; Immunoglobulin
    cd00063
    Location:497 → 594
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...

  2. XM_044752313.1 → XP_044608248.1  neural cell adhesion molecule 1 isoform X7

    UniProtKB/TrEMBL
    A0A9L0JY20
    Related
    ENSEASP00005054005.1, ENSEAST00005042335.1
    Conserved Domains (5) summary
    cd05730
    Location:211 → 306
    IgI_3_NCAM-1; Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule 1 (NCAM-1); member of the I-set of IgSF domains
    cd05869
    Location:305 → 401
    IgI_NCAM-1; Immunoglobulin (Ig)-like I-set domain of Neural Cell Adhesion Molecule 1 (NCAM-1)
    smart00409
    Location:26 → 112
    IG; Immunoglobulin
    cd00063
    Location:497 → 594
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    TIGR00601
    Location:1024 → 1104
    rad23; UV excision repair protein Rad23

  3. XM_014855478.2 → XP_014710964.1  neural cell adhesion molecule 1 isoform X11

    UniProtKB/TrEMBL
    A0A8C4LGF4
    Conserved Domains (9) summary
    pfam05887
    Location:755 → 838
    Trypan_PARP; Procyclic acidic repetitive protein (PARP)
    cd05730
    Location:211 → 306
    Ig3_NCAM-1_like; Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)
    cd05865
    Location:20 → 115
    Ig1_NCAM-1; First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1
    cd05869
    Location:305 → 401
    Ig5_NCAM-1; Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)
    smart00408
    Location:417 → 485
    IGc2; Immunoglobulin C-2 Type
    smart00410
    Location:410 → 488
    IG_like; Immunoglobulin like
    cd00063
    Location:497 → 594
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam07679
    Location:218 → 303
    I-set; Immunoglobulin I-set domain
    pfam00041
    Location:601 → 683
    fn3; Fibronectin type III domain

  4. XM_044752312.1 → XP_044608247.1  neural cell adhesion molecule 1 isoform X6

    UniProtKB/TrEMBL
    A0A9L0JY20
    Conserved Domains (5) summary
    cd05730
    Location:211 → 306
    IgI_3_NCAM-1; Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule 1 (NCAM-1); member of the I-set of IgSF domains
    cd05869
    Location:305 → 401
    IgI_NCAM-1; Immunoglobulin (Ig)-like I-set domain of Neural Cell Adhesion Molecule 1 (NCAM-1)
    smart00409
    Location:26 → 112
    IG; Immunoglobulin
    cd00063
    Location:497 → 594
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    TIGR00601
    Location:1031 → 1111
    rad23; UV excision repair protein Rad23

  5. XM_044752316.1 → XP_044608251.1  neural cell adhesion molecule 1 isoform X10

    UniProtKB/TrEMBL
    A0A8C4LGF4
    Conserved Domains (4) summary
    cd05730
    Location:211 → 306
    IgI_3_NCAM-1; Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule 1 (NCAM-1); member of the I-set of IgSF domains
    cd05869
    Location:305 → 411
    IgI_NCAM-1; Immunoglobulin (Ig)-like I-set domain of Neural Cell Adhesion Molecule 1 (NCAM-1)
    smart00409
    Location:26 → 112
    IG; Immunoglobulin
    cd00063
    Location:507 → 604
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...

  6. XM_014855475.2 → XP_014710961.1  neural cell adhesion molecule 1 isoform X5

    UniProtKB/TrEMBL
    A0A8C4LJ30, A0A9L0JY20
    Related
    ENSEASP00005009470.2, ENSEAST00005010289.2
    Conserved Domains (8) summary
    cd05730
    Location:211 → 306
    Ig3_NCAM-1_like; Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)
    cd05865
    Location:20 → 115
    Ig1_NCAM-1; First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1
    cd05869
    Location:305 → 411
    Ig5_NCAM-1; Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)
    smart00408
    Location:427 → 495
    IGc2; Immunoglobulin C-2 Type
    smart00410
    Location:420 → 498
    IG_like; Immunoglobulin like
    cd00063
    Location:507 → 604
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam07679
    Location:218 → 303
    I-set; Immunoglobulin I-set domain
    pfam00041
    Location:611 → 693
    fn3; Fibronectin type III domain

  7. XM_014855474.2 → XP_014710960.1  neural cell adhesion molecule 1 isoform X4

    UniProtKB/TrEMBL
    A0A9L0JY20
    Conserved Domains (8) summary
    cd05730
    Location:211 → 306
    Ig3_NCAM-1_like; Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)
    cd05865
    Location:20 → 115
    Ig1_NCAM-1; First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1
    cd05869
    Location:305 → 411
    Ig5_NCAM-1; Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)
    smart00408
    Location:427 → 495
    IGc2; Immunoglobulin C-2 Type
    smart00410
    Location:420 → 498
    IG_like; Immunoglobulin like
    cd00063
    Location:507 → 604
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam07679
    Location:218 → 303
    I-set; Immunoglobulin I-set domain
    pfam00041
    Location:612 → 694
    fn3; Fibronectin type III domain

  8. XM_014855473.2 → XP_014710959.1  neural cell adhesion molecule 1 isoform X2

    UniProtKB/TrEMBL
    A0A9L0JY20
    Conserved Domains (8) summary
    cd05730
    Location:211 → 306
    Ig3_NCAM-1_like; Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)
    cd05865
    Location:20 → 115
    Ig1_NCAM-1; First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1
    cd05869
    Location:305 → 411
    Ig5_NCAM-1; Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)
    smart00408
    Location:427 → 495
    IGc2; Immunoglobulin C-2 Type
    smart00410
    Location:420 → 498
    IG_like; Immunoglobulin like
    cd00063
    Location:507 → 604
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam07679
    Location:218 → 303
    I-set; Immunoglobulin I-set domain
    pfam00041
    Location:616 → 698
    fn3; Fibronectin type III domain

  9. XM_044752315.1 → XP_044608250.1  neural cell adhesion molecule 1 isoform X9

    UniProtKB/TrEMBL
    A0A8C4LGF4
    Conserved Domains (4) summary
    cd05730
    Location:211 → 306
    IgI_3_NCAM-1; Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule 1 (NCAM-1); member of the I-set of IgSF domains
    cd05869
    Location:305 → 411
    IgI_NCAM-1; Immunoglobulin (Ig)-like I-set domain of Neural Cell Adhesion Molecule 1 (NCAM-1)
    smart00409
    Location:26 → 112
    IG; Immunoglobulin
    cd00063
    Location:507 → 604
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...

  10. XM_044752311.1 → XP_044608246.1  neural cell adhesion molecule 1 isoform X3

    UniProtKB/TrEMBL
    A0A9L0JY20
    Conserved Domains (7) summary
    cd05730
    Location:211 → 306
    IgI_3_NCAM-1; Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule 1 (NCAM-1); member of the I-set of IgSF domains
    cd05869
    Location:305 → 411
    IgI_NCAM-1; Immunoglobulin (Ig)-like I-set domain of Neural Cell Adhesion Molecule 1 (NCAM-1)
    smart00409
    Location:26 → 112
    IG; Immunoglobulin
    smart00410
    Location:124 → 190
    IG_like; Immunoglobulin like
    cd00063
    Location:507 → 604
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    TIGR00601
    Location:1040 → 1120
    rad23; UV excision repair protein Rad23
    cd00096
    Location:135 → 139
    Ig; Ig strand B [structural motif]

  11. XM_044752314.1 → XP_044608249.1  neural cell adhesion molecule 1 isoform X8

    UniProtKB/TrEMBL
    A0A8C4LGF4
    Related
    ENSEASP00005009474.2, ENSEAST00005010293.2
    Conserved Domains (4) summary
    cd05730
    Location:211 → 306
    IgI_3_NCAM-1; Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule 1 (NCAM-1); member of the I-set of IgSF domains
    cd05869
    Location:305 → 411
    IgI_NCAM-1; Immunoglobulin (Ig)-like I-set domain of Neural Cell Adhesion Molecule 1 (NCAM-1)
    smart00409
    Location:26 → 112
    IG; Immunoglobulin
    cd00063
    Location:507 → 604
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...

  12. XM_014855472.2 → XP_014710958.1  neural cell adhesion molecule 1 isoform X1

    UniProtKB/TrEMBL
    A0A9L0JY20
    Conserved Domains (8) summary
    cd05730
    Location:211 → 306
    Ig3_NCAM-1_like; Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)
    cd05865
    Location:20 → 115
    Ig1_NCAM-1; First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1
    cd05869
    Location:305 → 411
    Ig5_NCAM-1; Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)
    smart00408
    Location:427 → 495
    IGc2; Immunoglobulin C-2 Type
    smart00410
    Location:420 → 498
    IG_like; Immunoglobulin like
    cd00063
    Location:507 → 604
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam07679
    Location:218 → 303
    I-set; Immunoglobulin I-set domain
    pfam00041
    Location:617 → 699
    fn3; Fibronectin type III domain

  13. XM_044752322.1 → XP_044608257.1  neural cell adhesion molecule 1 isoform X17

    UniProtKB/TrEMBL
    A0A8C4PJE8
    Conserved Domains (5) summary
    cd05730
    Location:211 → 306
    IgI_3_NCAM-1; Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule 1 (NCAM-1); member of the I-set of IgSF domains
    cd05869
    Location:305 → 401
    IgI_NCAM-1; Immunoglobulin (Ig)-like I-set domain of Neural Cell Adhesion Molecule 1 (NCAM-1)
    smart00410
    Location:26 → 112
    IG_like; Immunoglobulin like
    cd00063
    Location:497 → 594
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd00096
    Location:37 → 41
    Ig; Ig strand B [structural motif]

  14. XM_044752321.1 → XP_044608256.1  neural cell adhesion molecule 1 isoform X16

    UniProtKB/TrEMBL
    A0A8C4PJE8
    Conserved Domains (5) summary
    cd05730
    Location:211 → 306
    IgI_3_NCAM-1; Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule 1 (NCAM-1); member of the I-set of IgSF domains
    cd05869
    Location:305 → 401
    IgI_NCAM-1; Immunoglobulin (Ig)-like I-set domain of Neural Cell Adhesion Molecule 1 (NCAM-1)
    smart00410
    Location:26 → 112
    IG_like; Immunoglobulin like
    cd00063
    Location:497 → 594
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd00096
    Location:37 → 41
    Ig; Ig strand B [structural motif]

  15. XM_044752320.1 → XP_044608255.1  neural cell adhesion molecule 1 isoform X15

    UniProtKB/TrEMBL
    A0A8C4PJE8
    Conserved Domains (6) summary
    cd05730
    Location:211 → 306
    IgI_3_NCAM-1; Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule 1 (NCAM-1); member of the I-set of IgSF domains
    cd05869
    Location:305 → 411
    IgI_NCAM-1; Immunoglobulin (Ig)-like I-set domain of Neural Cell Adhesion Molecule 1 (NCAM-1)
    smart00409
    Location:26 → 112
    IG; Immunoglobulin
    smart00410
    Location:420 → 498
    IG_like; Immunoglobulin like
    cd00063
    Location:507 → 604
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd00096
    Location:431 → 435
    Ig; Ig strand B [structural motif]

  16. XM_044752319.1 → XP_044608254.1  neural cell adhesion molecule 1 isoform X14

    UniProtKB/TrEMBL
    A0A8C4PJE8
    Related
    ENSEASP00005054108.1, ENSEAST00005060905.1
    Conserved Domains (6) summary
    cd05730
    Location:211 → 306
    IgI_3_NCAM-1; Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule 1 (NCAM-1); member of the I-set of IgSF domains
    cd05869
    Location:305 → 411
    IgI_NCAM-1; Immunoglobulin (Ig)-like I-set domain of Neural Cell Adhesion Molecule 1 (NCAM-1)
    smart00409
    Location:26 → 112
    IG; Immunoglobulin
    smart00410
    Location:420 → 498
    IG_like; Immunoglobulin like
    cd00063
    Location:507 → 604
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd00096
    Location:431 → 435
    Ig; Ig strand B [structural motif]

  17. XM_044752318.1 → XP_044608253.1  neural cell adhesion molecule 1 isoform X13

    UniProtKB/TrEMBL
    A0A8C4PJE8
    Related
    ENSEASP00005009478.2, ENSEAST00005010297.2
    Conserved Domains (6) summary
    cd05730
    Location:211 → 306
    IgI_3_NCAM-1; Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule 1 (NCAM-1); member of the I-set of IgSF domains
    cd05869
    Location:305 → 411
    IgI_NCAM-1; Immunoglobulin (Ig)-like I-set domain of Neural Cell Adhesion Molecule 1 (NCAM-1)
    smart00409
    Location:26 → 112
    IG; Immunoglobulin
    smart00410
    Location:420 → 498
    IG_like; Immunoglobulin like
    cd00063
    Location:507 → 604
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd00096
    Location:431 → 435
    Ig; Ig strand B [structural motif]

  18. XM_044752323.1 → XP_044608258.1  neural cell adhesion molecule 1 isoform X18

    UniProtKB/TrEMBL
    A0A8C4LKT4
    Conserved Domains (6) summary
    cd05730
    Location:211 → 306
    IgI_3_NCAM-1; Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule 1 (NCAM-1); member of the I-set of IgSF domains
    cd05869
    Location:305 → 411
    IgI_NCAM-1; Immunoglobulin (Ig)-like I-set domain of Neural Cell Adhesion Molecule 1 (NCAM-1)
    smart00409
    Location:26 → 112
    IG; Immunoglobulin
    smart00410
    Location:420 → 498
    IG_like; Immunoglobulin like
    cd00063
    Location:507 → 604
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd00096
    Location:431 → 435
    Ig; Ig strand B [structural motif]
Nucleotide Protein
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