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SMPD1 sphingomyelin phosphodiesterase 1 [ Equus asinus (ass) ]

Gene ID: 106838188, updated on 13-Mar-2024

Summary

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Gene symbol
SMPD1
Gene description
sphingomyelin phosphodiesterase 1
See related
Ensembl:ENSEASG00005001666
Gene type
protein coding
RefSeq status
MODEL
Organism
Equus asinus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
Orthologs
human mouse all
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Genomic context

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See SMPD1 in Genome Data Viewer
Location:
chromosome: 20
Exon count:
6
Annotation release Status Assembly Chr Location
101 current ASM1607732v2 (GCF_016077325.2) 20 NC_052196.1 (76976412..76980853)
100 previous assembly ASM130575v1 (GCF_001305755.1) Unplaced Scaffold NW_014638060.1 (2380857..2385293, complement)

Chromosome 20 - NC_052196.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC123278874 Neighboring gene caveolae associated protein 3 Neighboring gene amyloid beta precursor protein binding family B member 1 Neighboring gene hemopexin

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables acid sphingomyelin phosphodiesterase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in ceramide biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in sphingomyelin catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in lysosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sphingomyelin phosphodiesterase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Equus asinus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1607732v2

Genomic

  1. NC_052196.1 Reference ASM1607732v2

    Range
    76976412..76980853
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014852131.2 → XP_014707617.1  sphingomyelin phosphodiesterase

    UniProtKB/TrEMBL
    A0A8C4PFQ4
    Related
    ENSEASP00005002110.2, ENSEAST00005002330.2
    Conserved Domains (3) summary
    smart00741
    Location:83 → 156
    SapB; Saposin (B) Domains
    cd00842
    Location:197 → 492
    MPP_ASMase; acid sphingomyelinase and related proteins, metallophosphatase domain
    pfam00149
    Location:250 → 457
    Metallophos; Calcineurin-like phosphoesterase
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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