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SDC1 syndecan 1 [ Equus asinus (ass) ]

Gene ID: 106835580, updated on 13-Mar-2024

Summary

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Gene symbol
SDC1
Gene description
syndecan 1
See related
Ensembl:ENSEASG00005009418
Gene type
protein coding
RefSeq status
MODEL
Organism
Equus asinus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
Orthologs
human mouse all
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Genomic context

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See SDC1 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
6
Annotation release Status Assembly Chr Location
101 current ASM1607732v2 (GCF_016077325.2) 6 NC_052182.1 (16705440..16729218, complement)
100 previous assembly ASM130575v1 (GCF_001305755.1) Unplaced Scaffold NW_014638003.1 (464385..492078)

Chromosome 6 - NC_052182.1Genomic Context describing neighboring genes Neighboring gene lysosomal protein transmembrane 4 alpha Neighboring gene uncharacterized LOC106835641 Neighboring gene pumilio RNA binding family member 2 Neighboring gene b(0,+)-type amino acid transporter 1-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell surface IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
syndecan-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Equus asinus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1607732v2

Genomic

  1. NC_052182.1 Reference ASM1607732v2

    Range
    16705440..16729218 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014848038.2 → XP_014703524.2  syndecan-1 isoform X2

    UniProtKB/TrEMBL
    A0A8C4LS07, A0A9L0K5I8
    Related
    ENSEASP00005057627.1, ENSEAST00005081434.1
    Conserved Domains (1) summary
    smart00294
    Location:276 → 294
    4.1m; putative band 4.1 homologues' binding motif

  2. XM_044771988.1 → XP_044627923.1  syndecan-1 isoform X1

    UniProtKB/TrEMBL
    A0A9L0IIP0
    Related
    ENSEASP00005040820.1, ENSEAST00005056417.1
    Conserved Domains (1) summary
    smart00294
    Location:295 → 313
    4.1m; putative band 4.1 homologues' binding motif
Nucleotide Protein
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