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CNTN6 contactin 6 [ Equus asinus (ass) ]

Gene ID: 106832431, updated on 13-Mar-2024

Summary

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Gene symbol
CNTN6
Gene description
contactin 6
See related
Ensembl:ENSEASG00005003549
Gene type
protein coding
RefSeq status
MODEL
Organism
Equus asinus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
Orthologs
human mouse all
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Genomic context

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See CNTN6 in Genome Data Viewer
Location:
chromosome: 21
Exon count:
23
Annotation release Status Assembly Chr Location
101 current ASM1607732v2 (GCF_016077325.2) 21 NC_052197.1 (82406743..82699372)
100 previous assembly ASM130575v1 (GCF_001305755.1) Unplaced Scaffold NW_014637809.1 (2953585..3195292, complement)

Chromosome 21 - NC_052197.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC123279607 Neighboring gene lymphocyte antigen 6 complex locus protein G6c-like Neighboring gene U6 spliceosomal RNA Neighboring gene 40S ribosomal protein SA-like Neighboring gene uncharacterized LOC123279425

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cell-cell adhesion mediator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in brain development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
contactin-6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Equus asinus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1607732v2

Genomic

  1. NC_052197.1 Reference ASM1607732v2

    Range
    82406743..82699372
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014843193.2 → XP_014698679.2  contactin-6

    UniProtKB/TrEMBL
    A0A8C4L2J0, A0A9L0IAX1
    Related
    ENSEASP00005037967.1, ENSEAST00005056780.1
    Conserved Domains (5) summary
    smart00408
    Location:46 → 107
    IGc2; Immunoglobulin C-2 Type
    smart00409
    Location:417 → 496
    IG; Immunoglobulin
    cd00063
    Location:598 → 691
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd00096
    Location:335 → 339
    Ig; Ig strand B [structural motif]
    cl11960
    Location:319 → 403
    Ig; Immunoglobulin domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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