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SMPD2 sphingomyelin phosphodiesterase 2 [ Equus asinus (ass) ]

Gene ID: 106829757, updated on 13-Mar-2024

Summary

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Gene symbol
SMPD2
Gene description
sphingomyelin phosphodiesterase 2
See related
Ensembl:ENSEASG00005006484
Gene type
protein coding
RefSeq status
MODEL
Organism
Equus asinus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
Orthologs
human mouse all
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Genomic context

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See SMPD2 in Genome Data Viewer
Location:
chromosome: 24
Exon count:
10
Annotation release Status Assembly Chr Location
101 current ASM1607732v2 (GCF_016077325.2) 24 NC_052200.1 (31019987..31022907)
100 previous assembly ASM130575v1 (GCF_001305755.1) Unplaced Scaffold NW_014637311.1 (2872261..2875463, complement)

Chromosome 24 - NC_052200.1Genomic Context describing neighboring genes Neighboring gene CD164 molecule Neighboring gene uncharacterized LOC123280508 Neighboring gene peptidylprolyl isomerase like 6 Neighboring gene microtubule associated monooxygenase, calponin and LIM domain containing 1 Neighboring gene zinc finger and BTB domain containing 24

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables sphingomyelin phosphodiesterase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sphingomyelin phosphodiesterase 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Equus asinus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1607732v2

Genomic

  1. NC_052200.1 Reference ASM1607732v2

    Range
    31019987..31022907
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014839027.2 → XP_014694513.1  sphingomyelin phosphodiesterase 2

    UniProtKB/TrEMBL
    A0A8C4LCC5
    Related
    ENSEASP00005009050.1, ENSEAST00005009856.2
    Conserved Domains (1) summary
    cl00490
    Location:11 → 279
    EEP; Exonuclease-Endonuclease-Phosphatase (EEP) domain superfamily
Nucleotide Protein
Heading Accession and Version

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