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CD1D CD1d molecule [ Equus asinus (ass) ]

Gene ID: 106828429, updated on 13-Mar-2024

Summary

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Gene symbol
CD1D
Gene description
CD1d molecule
Gene type
protein coding
RefSeq status
MODEL
Organism
Equus asinus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
Orthologs
human mouse all
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Genomic context

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See CD1D in Genome Data Viewer
Location:
chromosome: 25
Exon count:
6
Annotation release Status Assembly Chr Location
101 current ASM1607732v2 (GCF_016077325.2) 25 NC_052201.1 (4935937..4940310, complement)
100 previous assembly ASM130575v1 (GCF_001305755.1) Unplaced Scaffold NW_014637092.1 (1038178..1043423, complement)

Chromosome 25 - NC_052201.1Genomic Context describing neighboring genes Neighboring gene T-cell surface glycoprotein CD1a-like Neighboring gene deoxycytidylate deaminase-like Neighboring gene small integral membrane protein 42-like Neighboring gene kirre like nephrin family adhesion molecule 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables endogenous lipid antigen binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables exogenous lipid antigen binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables lipopeptide binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in antigen processing and presentation, endogenous lipid antigen via MHC class Ib IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in antigen processing and presentation, exogenous lipid antigen via MHC class Ib IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in immune response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of T cell mediated cytotoxicity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in external side of plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
antigen-presenting glycoprotein CD1d

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Equus asinus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1607732v2

Genomic

  1. NC_052201.1 Reference ASM1607732v2

    Range
    4935937..4940310 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014836873.2 → XP_014692359.2  antigen-presenting glycoprotein CD1d isoform X4

    Conserved Domains (1) summary
    smart00407
    Location:118 → 185
    IGc1; Immunoglobulin C-Type

  2. XM_044758563.1 → XP_044614498.1  antigen-presenting glycoprotein CD1d isoform X3

  3. XM_044758562.1 → XP_044614497.1  antigen-presenting glycoprotein CD1d isoform X2

    Conserved Domains (1) summary
    smart00407
    Location:283 → 350
    IGc1; Immunoglobulin C-Type

  4. XM_044758561.1 → XP_044614496.1  antigen-presenting glycoprotein CD1d isoform X1

    Conserved Domains (1) summary
    smart00407
    Location:283 → 350
    IGc1; Immunoglobulin C-Type
Nucleotide Protein
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