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MDH1 malate dehydrogenase 1 [ Equus asinus (ass) ]

Gene ID: 106828371, updated on 26-Jun-2024

Summary

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Gene symbol
MDH1
Gene description
malate dehydrogenase 1
See related
Ensembl:ENSEASG00005007262
Gene type
protein coding
RefSeq status
MODEL
Organism
Equus asinus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
Orthologs
human mouse all
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Genomic context

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See MDH1 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
9
Annotation release Status Assembly Chr Location
101 current ASM1607732v2 (GCF_016077325.2) 6 NC_052182.1 (54754507..54773632)
100 previous assembly ASM130575v1 (GCF_001305755.1) Unplaced Scaffold NW_014637091.1 (8718341..8737648, complement)

Chromosome 6 - NC_052182.1Genomic Context describing neighboring genes Neighboring gene orthodenticle homeobox 1 Neighboring gene WD repeat containing planar cell polarity effector Neighboring gene uncharacterized LOC123286617 Neighboring gene uncharacterized LOC106828370

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables L-malate dehydrogenase (NAD+) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in NADH metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in malate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in oxaloacetate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in tricarboxylic acid cycle IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
malate dehydrogenase, cytoplasmic

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Equus asinus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1607732v2

Genomic

  1. NC_052182.1 Reference ASM1607732v2

    Range
    54754507..54773632
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014836803.2 → XP_014692289.1  malate dehydrogenase, cytoplasmic

    UniProtKB/TrEMBL
    A0A8C4LG27, A0A9L0I8X8
    Related
    ENSEASP00005036456.1, ENSEAST00005046476.1
    Conserved Domains (2) summary
    TIGR01759
    Location:2 → 327
    MalateDH-SF1; malate dehydrogenase
    cd01336
    Location:3 → 328
    MDH_cytoplasmic_cytosolic; Cytoplasmic and cytosolic Malate dehydrogenases
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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