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SLC39A8 solute carrier family 39 member 8 [ Equus asinus (ass) ]

Gene ID: 106825954, updated on 13-Mar-2024

Summary

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Gene symbol
SLC39A8
Gene description
solute carrier family 39 member 8
See related
Ensembl:ENSEASG00005018524
Gene type
protein coding
RefSeq status
MODEL
Organism
Equus asinus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
Orthologs
human mouse all
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Genomic context

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See SLC39A8 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
10
Annotation release Status Assembly Chr Location
101 current ASM1607732v2 (GCF_016077325.2) 3 NC_052179.1 (180550513..180618925, complement)
100 previous assembly ASM130575v1 (GCF_001305755.1) Unplaced Scaffold NW_014638677.1 (262995..331690)

Chromosome 3 - NC_052179.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC123283865 Neighboring gene uncharacterized LOC123283866 Neighboring gene uncharacterized LOC123283867 Neighboring gene B cell scaffold protein with ankyrin repeats 1 Neighboring gene nuclear factor kappa B subunit 1 Neighboring gene mannosidase beta

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables zinc ion transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in intracellular zinc ion homeostasis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in zinc ion import across plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
metal cation symporter ZIP8

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Equus asinus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1607732v2

Genomic

  1. NC_052179.1 Reference ASM1607732v2

    Range
    180550513..180618925 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_044766388.1 → XP_044622323.1  metal cation symporter ZIP8 isoform X2

    UniProtKB/TrEMBL
    A0A8C4MS29, A0A9L0IZU3
    Related
    ENSEASP00005027189.2, ENSEAST00005029520.2
    Conserved Domains (1) summary
    COG0428
    Location:298 → 417
    ZupT; Zinc transporter ZupT [Inorganic ion transport and metabolism]

  2. XM_014832985.2 → XP_014688471.2  metal cation symporter ZIP8 isoform X1

    UniProtKB/TrEMBL
    A0A9L0IZU3, A0A9L0KCW0
    Conserved Domains (1) summary
    COG0428
    Location:310 → 429
    ZupT; Zinc transporter ZupT [Inorganic ion transport and metabolism]

  3. XM_014832983.2 → XP_014688469.2  metal cation symporter ZIP8 isoform X1

    UniProtKB/TrEMBL
    A0A9L0IZU3, A0A9L0KCW0
    Related
    ENSEASP00005060282.1, ENSEAST00005079807.1
    Conserved Domains (1) summary
    COG0428
    Location:310 → 429
    ZupT; Zinc transporter ZupT [Inorganic ion transport and metabolism]
Nucleotide Protein
Heading Accession and Version

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