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NCAN neurocan [ Equus asinus (ass) ]

Gene ID: 106825467, updated on 13-Mar-2024

Summary

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Gene symbol
NCAN
Gene description
neurocan
See related
Ensembl:ENSEASG00005006587
Gene type
protein coding
RefSeq status
MODEL
Organism
Equus asinus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 1
Exon count:
16
Annotation release Status Assembly Chr Location
101 current ASM1607732v2 (GCF_016077325.2) 1 NC_052177.1 (116881555..116908331, complement)
100 previous assembly ASM130575v1 (GCF_001305755.1) Unplaced Scaffold NW_014638639.1 (65631..93162)

Chromosome 1 - NC_052177.1Genomic Context describing neighboring genes Neighboring gene transmembrane 6 superfamily member 2 Neighboring gene hyaluronan and proteoglycan link protein 4 Neighboring gene nuclear receptor 2C2 associated protein Neighboring gene regulatory factor X associated ankyrin containing protein Neighboring gene BLOC-1 related complex subunit 8

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables hyaluronic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
neurocan core protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Equus asinus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1607732v2

Genomic

  1. NC_052177.1 Reference ASM1607732v2

    Range
    116881555..116908331 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014832257.2 → XP_014687743.2  neurocan core protein

    UniProtKB/TrEMBL
    A0A8C4PJ05, A0A8C4PJA6
    Conserved Domains (6) summary
    cd00033
    Location:1259 → 1315
    CCP; Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system
    PHA03307
    Location:355 → 813
    PHA03307; transcriptional regulator ICP4; Provisional
    cd00054
    Location:1090 → 1126
    EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
    cd03517
    Location:163 → 257
    Link_domain_CSPGs_modules_1_3; this extracellular link domain is found in the first and third link modules of the chondroitin sulfate proteoglycan core protein (CSPG) aggrecan. In addition, it is found in the first link module of three other CSPGs: versican, neurocan, and brevican. ...
    cd03520
    Location:264 → 359
    Link_domain_CSPGs_modules_2_4; this link domain is found in the second and fourth link modules of the chondroitin sulfate proteoglycan core protein (CSPG) aggrecan and, in the second link module of three other CSPGs: versican, neurocan, and brevican. The link domain is a hyaluronan ...
    cl02432
    Location:1132 → 1255
    CLECT; C-type lectin (CTL)/C-type lectin-like (CTLD) domain

  2. XM_014832256.2 → XP_014687742.2  neurocan core protein

    UniProtKB/TrEMBL
    A0A8C4PJ05, A0A8C4PJA6
    Related
    ENSEASP00005009200.2, ENSEAST00005010010.2
    Conserved Domains (6) summary
    cd00033
    Location:1259 → 1315
    CCP; Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system
    PHA03307
    Location:355 → 813
    PHA03307; transcriptional regulator ICP4; Provisional
    cd00054
    Location:1090 → 1126
    EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
    cd03517
    Location:163 → 257
    Link_domain_CSPGs_modules_1_3; this extracellular link domain is found in the first and third link modules of the chondroitin sulfate proteoglycan core protein (CSPG) aggrecan. In addition, it is found in the first link module of three other CSPGs: versican, neurocan, and brevican. ...
    cd03520
    Location:264 → 359
    Link_domain_CSPGs_modules_2_4; this link domain is found in the second and fourth link modules of the chondroitin sulfate proteoglycan core protein (CSPG) aggrecan and, in the second link module of three other CSPGs: versican, neurocan, and brevican. The link domain is a hyaluronan ...
    cl02432
    Location:1132 → 1255
    CLECT; C-type lectin (CTL)/C-type lectin-like (CTLD) domain
Nucleotide Protein
Heading Accession and Version

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