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GGTA1 glycoprotein alpha-galactosyltransferase 1 (inactive) [ Equus asinus (ass) ]

Gene ID: 106824198, updated on 13-Mar-2024

Summary

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Gene symbol
GGTA1
Gene description
glycoprotein alpha-galactosyltransferase 1 (inactive)
Gene type
protein coding
RefSeq status
MODEL
Organism
Equus asinus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
Orthologs
human mouse all
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Genomic context

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See GGTA1 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
14
Annotation release Status Assembly Chr Location
101 current ASM1607732v2 (GCF_016077325.2) 10 NC_052186.1 (21445617..21517331)
100 previous assembly ASM130575v1 (GCF_001305755.1) Unplaced Scaffold NW_014638558.1 (5964214..6006818, complement)

Chromosome 10 - NC_052186.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC123289305 Neighboring gene uncharacterized LOC123289306 Neighboring gene N-acetyllactosaminide alpha-1,3-galactosyltransferase-like Neighboring gene uncharacterized LOC123289308 Neighboring gene N-acetyllactosaminide alpha-1,3-galactosyltransferase-like 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hexosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in lipid glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
inactive N-acetyllactosaminide alpha-1,3-galactosyltransferase
Names
N-acetyllactosaminide alpha-1,3-galactosyltransferase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Equus asinus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1607732v2

Genomic

  1. NC_052186.1 Reference ASM1607732v2

    Range
    21445617..21517331
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_044778873.1 → XP_044634808.1  inactive N-acetyllactosaminide alpha-1,3-galactosyltransferase isoform X2

    UniProtKB/TrEMBL
    A0A8C4PUH9
    Conserved Domains (1) summary
    cl11394
    Location:94 → 317
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold

  2. XM_044778872.1 → XP_044634807.1  inactive N-acetyllactosaminide alpha-1,3-galactosyltransferase isoform X1

    UniProtKB/TrEMBL
    A0A8C4PUH9
    Conserved Domains (1) summary
    cd02515
    Location:92 → 363
    Glyco_transf_6; Glycosyltransferase family 6 comprises enzymes responsible for the production of the human ABO blood group antigens

  3. XM_044778876.1 → XP_044634811.1  inactive N-acetyllactosaminide alpha-1,3-galactosyltransferase isoform X3

    UniProtKB/TrEMBL
    A0A8C4PUH9
    Conserved Domains (1) summary
    cd02515
    Location:96 → 367
    Glyco_transf_6; Glycosyltransferase family 6 comprises enzymes responsible for the production of the human ABO blood group antigens

  4. XM_044778879.1 → XP_044634814.1  inactive N-acetyllactosaminide alpha-1,3-galactosyltransferase isoform X1

    UniProtKB/TrEMBL
    A0A8C4PUH9
    Conserved Domains (1) summary
    cd02515
    Location:92 → 363
    Glyco_transf_6; Glycosyltransferase family 6 comprises enzymes responsible for the production of the human ABO blood group antigens

  5. XM_044778875.1 → XP_044634810.1  inactive N-acetyllactosaminide alpha-1,3-galactosyltransferase isoform X3

    UniProtKB/TrEMBL
    A0A8C4PUH9
    Conserved Domains (1) summary
    cd02515
    Location:96 → 367
    Glyco_transf_6; Glycosyltransferase family 6 comprises enzymes responsible for the production of the human ABO blood group antigens

  6. XM_044778877.1 → XP_044634812.1  inactive N-acetyllactosaminide alpha-1,3-galactosyltransferase isoform X3

    UniProtKB/TrEMBL
    A0A8C4PUH9
    Conserved Domains (1) summary
    cd02515
    Location:96 → 367
    Glyco_transf_6; Glycosyltransferase family 6 comprises enzymes responsible for the production of the human ABO blood group antigens

  7. XM_044778878.1 → XP_044634813.1  inactive N-acetyllactosaminide alpha-1,3-galactosyltransferase isoform X3

    UniProtKB/TrEMBL
    A0A8C4PUH9
    Conserved Domains (1) summary
    cd02515
    Location:96 → 367
    Glyco_transf_6; Glycosyltransferase family 6 comprises enzymes responsible for the production of the human ABO blood group antigens

  8. XM_044778880.1 → XP_044634815.1  inactive N-acetyllactosaminide alpha-1,3-galactosyltransferase isoform X1

    UniProtKB/TrEMBL
    A0A8C4PUH9
    Conserved Domains (1) summary
    cd02515
    Location:92 → 363
    Glyco_transf_6; Glycosyltransferase family 6 comprises enzymes responsible for the production of the human ABO blood group antigens
Nucleotide Protein
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