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CTBS chitobiase [ Equus asinus (ass) ]

Gene ID: 106824009, updated on 13-Mar-2024

Summary

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Gene symbol
CTBS
Gene description
chitobiase
See related
Ensembl:ENSEASG00005014138
Gene type
protein coding
RefSeq status
MODEL
Organism
Equus asinus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
Orthologs
human mouse all
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Genomic context

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See CTBS in Genome Data Viewer
Location:
chromosome: 16
Exon count:
9
Annotation release Status Assembly Chr Location
101 current ASM1607732v2 (GCF_016077325.2) 16 NC_052192.1 (30112161..30162555)
100 previous assembly ASM130575v1 (GCF_001305755.1) Unplaced Scaffold NW_014638547.1 (1881417..1907562, complement)

Chromosome 16 - NC_052192.1Genomic Context describing neighboring genes Neighboring gene SSX family member 2 interacting protein Neighboring gene uncharacterized LOC123277614 Neighboring gene spermatogenesis associated 1 Neighboring gene G protein subunit gamma 5

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables chitin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables chitinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in chitin catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
di-N-acetylchitobiase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Equus asinus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1607732v2

Genomic

  1. NC_052192.1 Reference ASM1607732v2

    Range
    30112161..30162555
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014830036.2 → XP_014685522.1  di-N-acetylchitobiase

    UniProtKB/TrEMBL
    A0A8C4M201
    Related
    ENSEASP00005020566.2, ENSEAST00005022333.2
    Conserved Domains (2) summary
    cd02875
    Location:40 → 374
    GH18_chitobiase; Chitobiase (also known as di-N-acetylchitobiase) is a lysosomal glycosidase that hydrolyzes the reducing-end N-acetylglucosamine from the chitobiose core of oligosaccharides during the ordered degradation of asparagine-linked glycoproteins in eukaryotes. ...
    smart00636
    Location:114 → 354
    Glyco_18; Glyco_18 domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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