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GPCPD1 glycerophosphocholine phosphodiesterase 1 [ Equus asinus (ass) ]

Gene ID: 106823173, updated on 13-Mar-2024

Summary

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Gene symbol
GPCPD1
Gene description
glycerophosphocholine phosphodiesterase 1
See related
Ensembl:ENSEASG00005001356
Gene type
protein coding
RefSeq status
MODEL
Organism
Equus asinus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
Orthologs
human mouse all
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Genomic context

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See GPCPD1 in Genome Data Viewer
Location:
chromosome: 15
Exon count:
23
Annotation release Status Assembly Chr Location
101 current ASM1607732v2 (GCF_016077325.2) 15 NC_052191.1 (17648441..17699864)
100 previous assembly ASM130575v1 (GCF_001305755.1) Unplaced Scaffold NW_014638492.1 (2990866..3055912, complement)

Chromosome 15 - NC_052191.1Genomic Context describing neighboring genes Neighboring gene shieldin complex subunit 1 Neighboring gene uncharacterized LOC123277180 Neighboring gene uncharacterized LOC106823198 Neighboring gene uncharacterized LOC123277369 Neighboring gene uncharacterized LOC106823209

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycerophosphocholine phosphodiesterase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables starch binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in glycerophospholipid catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
glycerophosphocholine phosphodiesterase GPCPD1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Equus asinus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1607732v2

Genomic

  1. NC_052191.1 Reference ASM1607732v2

    Range
    17648441..17699864
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_044748731.1 → XP_044604666.1  glycerophosphocholine phosphodiesterase GPCPD1 isoform X1

    UniProtKB/TrEMBL
    A0A8C4KUA6, A0A8C4KVS2
    Conserved Domains (2) summary
    cd05814
    Location:4 → 127
    CBM20_Prei4; Prei4, N-terminal CBM20 (carbohydrate-binding module, family 20) domain. Preimplantation protein 4 (Prei4) is a protein of unknown function that is expressed during mouse preimplantation embryogenesis. In addition to the N-terminal CBM20 domain, Prei4 ...
    cd08607
    Location:319 → 611
    GDPD_GDE5; Glycerophosphodiester phosphodiesterase domain of putative mammalian glycerophosphodiester phosphodiesterase GDE5 and similar proteins

  2. XM_044748732.1 → XP_044604667.1  glycerophosphocholine phosphodiesterase GPCPD1 isoform X2

    UniProtKB/TrEMBL
    A0A8C4KUQ1, A0A8C4KVS2
    Conserved Domains (2) summary
    cd05814
    Location:4 → 127
    CBM20_Prei4; Prei4, N-terminal CBM20 (carbohydrate-binding module, family 20) domain. Preimplantation protein 4 (Prei4) is a protein of unknown function that is expressed during mouse preimplantation embryogenesis. In addition to the N-terminal CBM20 domain, Prei4 ...
    cd08607
    Location:319 → 610
    GDPD_GDE5; Glycerophosphodiester phosphodiesterase domain of putative mammalian glycerophosphodiester phosphodiesterase GDE5 and similar proteins

  3. XM_014828682.2 → XP_014684168.1  glycerophosphocholine phosphodiesterase GPCPD1 isoform X1

    UniProtKB/TrEMBL
    A0A8C4KUA6, A0A8C4KVS2
    Related
    ENSEASP00005001681.1, ENSEAST00005001874.2
    Conserved Domains (2) summary
    cd05814
    Location:4 → 127
    CBM20_Prei4; Prei4, N-terminal CBM20 (carbohydrate-binding module, family 20) domain. Preimplantation protein 4 (Prei4) is a protein of unknown function that is expressed during mouse preimplantation embryogenesis. In addition to the N-terminal CBM20 domain, Prei4 ...
    cd08607
    Location:319 → 611
    GDPD_GDE5; Glycerophosphodiester phosphodiesterase domain of putative mammalian glycerophosphodiester phosphodiesterase GDE5 and similar proteins

  4. XM_014828681.2 → XP_014684167.1  glycerophosphocholine phosphodiesterase GPCPD1 isoform X1

    UniProtKB/TrEMBL
    A0A8C4KUA6, A0A8C4KVS2
    Conserved Domains (2) summary
    cd05814
    Location:4 → 127
    CBM20_Prei4; Prei4, N-terminal CBM20 (carbohydrate-binding module, family 20) domain. Preimplantation protein 4 (Prei4) is a protein of unknown function that is expressed during mouse preimplantation embryogenesis. In addition to the N-terminal CBM20 domain, Prei4 ...
    cd08607
    Location:319 → 611
    GDPD_GDE5; Glycerophosphodiester phosphodiesterase domain of putative mammalian glycerophosphodiester phosphodiesterase GDE5 and similar proteins
Nucleotide Protein
Heading Accession and Version

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